View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14206_low_40 (Length: 260)
Name: NF14206_low_40
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_40 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 42194921 - 42195154
Alignment:
| Q |
11 |
cacagacaaagtctcagagaacaatgggatatttaaggttcagtataaaggacttagattggcccaaagaatgcaaatgccttcagctgcatgcatgcnn |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42194921 |
cacagacaaagtctcagagaacaatgggatatttaaggttcagtataaaggacttagattggcccaaagaatgcaaatgccttcagctgcatgcatgcaa |
42195020 |
T |
|
| Q |
111 |
nnnnnctacgtccccacttgtattgcagccaggaaatgcaaaacaatcaaggctatggcttctccaactgttgcagctcctaaaagagagaaagatccaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42195021 |
aaaaactacgtccccacttgtattgcagccaggaaatgcaaaacaatcaaggccatggcttctccaactgttgcagctcctaaaagagagaaagatccaa |
42195120 |
T |
|
| Q |
211 |
aaaagagagtagtaataacaggaatgggtcttgt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42195121 |
aaaagagagtagtaataacaggaatgggtcttgt |
42195154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 42200887 - 42201107
Alignment:
| Q |
14 |
agacaaagtctcagagaacaatgggatatttaaggttcagtataaaggacttagattggcccaaagaatgcaaatgccttcagctgcatgcatgcnnnnn |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
42200887 |
agacaaagtctcggagaacaatgggatatttaaggttcagcatgaaggacttaaattggcccaaagaatgca----------gctgcatgcatgcaaaaa |
42200976 |
T |
|
| Q |
114 |
nnctacgtccccacttgtattgcagccaggaaatgcaaaacaatcaaggctatggcttctccaactgttgcagctcctaaaagagagaaagatccaaaaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42200977 |
aactacgtccccacttgtattgcagccaggaaatgcaaaacaatcaaggctatggcttctccaactgtttcagctcctaaaagagagaaagatccaaaaa |
42201076 |
T |
|
| Q |
214 |
agagagtagtaataacaggaatgggtcttgt |
244 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
42201077 |
agagagtagtgataacaggaatgggtcttgt |
42201107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 42185290 - 42185398
Alignment:
| Q |
136 |
cagccaggaaatgcaaaacaatcaaggctatggcttctccaactgttgcagctcctaaaagagagaaagatccaaaaaagagagtagtaataacaggaat |
235 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42185290 |
cagccaagaaatgcaaaacaatcaaggccatggcttctccaactgttacagctcctaaaagagagaaagatccaaaaaagagagtagtaataacaggaat |
42185389 |
T |
|
| Q |
236 |
gggtcttgt |
244 |
Q |
| |
|
||||||||| |
|
|
| T |
42185390 |
gggtcttgt |
42185398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University