View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_41 (Length: 258)
Name: NF14206_low_41
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 136 - 249
Target Start/End: Original strand, 25812846 - 25812959
Alignment:
| Q |
136 |
aatatataacaaggctttgcaaggatgaaaccagatgcaccagaagggtttgcttttttgctcacaaaccagaggagcttcgactgttgtatgcttctac |
235 |
Q |
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| T |
25812846 |
aatatataacaaggctttgcaaggatgaaaccagatgcaccagaagggtttgcttttttgctcacaaaccagaggagcttcgaccgttatatgcttctac |
25812945 |
T |
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| Q |
236 |
cggttgtcctttgc |
249 |
Q |
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| T |
25812946 |
cggttgtcctttgc |
25812959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 25811849 - 25811972
Alignment:
| Q |
17 |
agaattctctcttgtttaccatcatattaaacaacgttttctcttttgattttgcagattctgtataaggggaaagataaacaaactgtaataaaataaa |
116 |
Q |
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| T |
25811849 |
agaattctctcttgtttagcatcatattaaaaaacgttttctcttttgattttgcagattctgtataaggggaaagctaaacaaactgtaataaaataaa |
25811948 |
T |
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| Q |
117 |
aagtcatgtgcaa-ggtgcgaata |
139 |
Q |
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| T |
25811949 |
aagtcatgttcaacggtgcgaata |
25811972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 25818514 - 25818597
Alignment:
| Q |
136 |
aatatataacaaggctttgcaaggatgaaaccagatgcaccagaagggtttgcttttttgctcacaaaccagaggagcttcgac |
219 |
Q |
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| T |
25818514 |
aatatagaacaaggcattgcaaggatgaaacctgctgcaccagaagcgtttgcatttttgctcacaaacccgaggagcttcgac |
25818597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 25817568 - 25817633
Alignment:
| Q |
19 |
aattctctcttgtttaccatcatattaaacaacgttttctcttttgattttgcagattctgtataa |
84 |
Q |
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| T |
25817568 |
aattctctctggtttggtatcatattaaaacacgttttctcttttgattttgcaaattctgtataa |
25817633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 25821923 - 25821963
Alignment:
| Q |
184 |
tttgcttttttgctcacaaaccagaggagcttcgactgttg |
224 |
Q |
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| T |
25821923 |
tttgcttctttgctcacaaacccgaggagcttcgcctgttg |
25821963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 33648052 - 33648149
Alignment:
| Q |
143 |
aacaaggctttgcaaggatgaaaccagatgcaccagaagggtttgcttttttgctcacaaaccagaggagcttcgactgttgtatgcttctaccggtt |
240 |
Q |
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| T |
33648052 |
aacaaggctttgcaaggatgaaactagatgcacgagaagggtttgctttttcgctcacaagccagaggagcttcgaccgttgtatgcttctaccggtt |
33648149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 33647022 - 33647087
Alignment:
| Q |
17 |
agaattctctcttgtttaccatcatattaaacaacgttttctcttttgattttgcagattctgtat |
82 |
Q |
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| T |
33647022 |
agaaatctctctggtttagtatcatattaaaacacattttctcttttgattttgcagattctgtat |
33647087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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