View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_48 (Length: 238)
Name: NF14206_low_48
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25170763 - 25170986
Alignment:
| Q |
1 |
cgatgttgggtaacacgtaacatggatgaagaagtcagattcaagcaaatttcat--ggttcatcgtgagannnnnnnnnngcagatgagataaagatga |
98 |
Q |
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| T |
25170763 |
cgatgttgggtaaaacgtaacatggatgaagaagttagattcaagcaaatttcatctggttcatcgtgagattttttttt-gcagatgagataaaggcga |
25170861 |
T |
|
| Q |
99 |
agaaatagagacaccataattttttagaaaaccaaagaacccannnnnnnaaatagacaaagaacacatttttcattcataagattggcatgctgagatg |
198 |
Q |
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| T |
25170862 |
agaaatagagacaccataattttttagaaaaccaaagaacccgtttttttaaatagacaaagaacacatttttcattcataagattggcatgctgagatg |
25170961 |
T |
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| Q |
199 |
tggtagtttctttttggtaaaaggt |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
25170962 |
tggtagtttctttttggtaaaaggt |
25170986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 352831 - 353074
Alignment:
| Q |
1 |
cgatgttgggtaacacgtaacatggatgaagaagtcagattcaagcaaatttcat--ggttcatcgtgagannnnnnnnnn------gcagatgagataa |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
352831 |
cgatgttgggtaacacgtaacatggatgaagaagtcagattcaagcaaatttcatctggttcatcgtgagattttattttttttgttgcagatgagataa |
352930 |
T |
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| Q |
93 |
agatgaagaaatagagacaccataattttttagaaaaccaaagaacccannnnnnnaaatagacaaagaacacatttttcattcataaga---------- |
182 |
Q |
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| T |
352931 |
agatgaagaaatagagacaccataattttttagaaaaccaaagaacccaattttttaaatagacaaagaacacatttttcattcataagagagtaatatg |
353030 |
T |
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| Q |
183 |
---ttggcatgctgagatgtggtagtttctttttggtaaaaggt |
223 |
Q |
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| T |
353031 |
tgtttggcatgctgagatgtggtagtttctttttggtaaaaggt |
353074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 353134 - 353174
Alignment:
| Q |
183 |
ttggcatgctgagatgtggtagtttctttttggtaaaaggt |
223 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
353134 |
ttggcatgctgagatgtggtagtttctttttggttaaaggt |
353174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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