View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_52 (Length: 230)
Name: NF14206_low_52
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 39 - 182
Target Start/End: Complemental strand, 26453464 - 26453321
Alignment:
| Q |
39 |
cctgtggagaaaaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagtgagagaagaggtatatt |
138 |
Q |
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| T |
26453464 |
cctgtggagaacaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagagagagaagaggtatatt |
26453365 |
T |
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| Q |
139 |
ggaaaatgagagaagaaatatgaggagcctacataaagtaaaat |
182 |
Q |
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| T |
26453364 |
ggaaaatgagagaagaaatatgaggagcctacataaagtaaaat |
26453321 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 47680406 - 47680488
Alignment:
| Q |
100 |
cagaaaaggtaagaaaagcagtgagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaagtaaaat |
182 |
Q |
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| T |
47680406 |
cagaaaaagtaagagaaggggagagagaagaggtataatggatgataagagaagaaacacgagggtcctacataaagtaaaat |
47680488 |
T |
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