View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_54 (Length: 223)
Name: NF14206_low_54
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 23366858 - 23366954
Alignment:
| Q |
19 |
actaaagctaaattggagatctatagaatcattcagggaccaaattaatgtgggggtctgacaaacacaagtaaggattattcgtgtgtgttgctta |
115 |
Q |
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| T |
23366858 |
actaaagctaaattggagatctatagaatcattcagggatcaaattaatgtggggttctgacaaacacaagcaaggattattcgtgtgtgttgctta |
23366954 |
T |
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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 23366987 - 23367084
Alignment:
| Q |
113 |
ttaaggtgggagaatgggattctagttcaagagagtaaagatcttaatgtt---tataaaacacttgtaaagagatttgcatttaaatctctccaaag |
207 |
Q |
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| T |
23366987 |
ttaaggtgggagaatggggttctagttcaagagagtaaagaccttaatgttgtttataaaacacttgtaaagagatttgcatttaaatctctccaaag |
23367084 |
T |
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