View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_56 (Length: 215)
Name: NF14206_low_56
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 29640206 - 29640403
Alignment:
| Q |
1 |
atctgcaaatatttgggtctgagtagcattttaactgtatcataaatggtttgtacgttaccaaaaatagcggtggaattgcatacaa-gataagtaatt |
99 |
Q |
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| T |
29640206 |
atctgcaaatatttgggtctgagtagtgttttaactatatcataaatggtttgtatgctcccaaaaatagcggtggaattgcatacaaagataagtgatt |
29640305 |
T |
|
| Q |
100 |
gacattactgaacatgaatcacattgttgcaatttgttacaacaaagttttagttcagttgacaaatcccaaaactttaataattgaattctcaagga |
197 |
Q |
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| T |
29640306 |
gacattaccgaacatgaatcacattgttgcaatttgttacaacaaagttgtagttcagttgacaaatcccaaaaccagtataattgaattctcaagga |
29640403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 31100316 - 31100420
Alignment:
| Q |
64 |
aaaatagcggtggaattgcatacaa-gataagtaattgacattactgaacatgaatcacattgttgcaatttgttacaacaaagttttagttcagttgac |
162 |
Q |
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| T |
31100316 |
aaaatagtagtggaattgcattcaaagatatgtggttgacattaccagacatgagttacattgttgcaacttgttactataaggttgtagttgagttgac |
31100415 |
T |
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| Q |
163 |
aaatc |
167 |
Q |
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||||| |
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| T |
31100416 |
aaatc |
31100420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 23195437 - 23195295
Alignment:
| Q |
25 |
agcattttaactgtatcataaatggtttgtacgttaccaaaaatagcggtggaattgcatacaagataagtaattgacattactgaacatgaatcacatt |
124 |
Q |
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| T |
23195437 |
agcattttaactatatcttgaatgttgtgtaccctcccgaaaatagtaatggaattgcatatgagataagtggttgacagtaccggacatgaatcacact |
23195338 |
T |
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| Q |
125 |
gttgcaatttgttacaacaaagttttagttcagttgacaaatc |
167 |
Q |
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| T |
23195337 |
gttgcaacttgttacaatagggttgtaattgagttgacaaatc |
23195295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 21177260 - 21177334
Alignment:
| Q |
65 |
aaatagcggtggaattgcataca-agataagtaattgacattactgaacatgaatcacattgttgcaatttgtta |
138 |
Q |
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|||||| |||||||||||||||| |||||||| |||||||||| | | |||| |||||||||||||| |||||| |
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| T |
21177260 |
aaatagtggtggaattgcatacatagataagtggttgacattaccggatatgagtcacattgttgcaacttgtta |
21177334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 40090876 - 40090980
Alignment:
| Q |
64 |
aaaatagcggtggaattgcat-acaagataagtaattgacattactgaacatgaatcacattgttgcaatttgttacaacaaagttttagttcagttgac |
162 |
Q |
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||||||| |||||||||||| | ||||||||| ||||| |||| ||||||| |||||| ||||||| ||||||||| | ||| ||||| ||||||| |
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| T |
40090876 |
aaaatagtagtggaattgcattagaagataagtggttgacgttaccgaacatgggtcacatcgttgcaacttgttacaatagggttgtagttgagttgac |
40090975 |
T |
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| Q |
163 |
aaatc |
167 |
Q |
| |
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||||| |
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|
| T |
40090976 |
aaatc |
40090980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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