View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_59 (Length: 205)
Name: NF14206_low_59
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_59 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 60 - 205
Target Start/End: Original strand, 36765349 - 36765490
Alignment:
| Q |
60 |
gttttactatgtccatttgcctaaaaatttataaactttaaattctttggctttattatgtcactatcagtgatcgatgttgagtttttaaaattacatt |
159 |
Q |
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| T |
36765349 |
gttttactatgtccatttgcataaaaatttataaactttaaattctttggctttattatgtcactattagt----aatgttgagtttttaaaattacatt |
36765444 |
T |
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| Q |
160 |
attttcccagtcttatatattatgtcctgttttgtttcatccataa |
205 |
Q |
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| T |
36765445 |
attttcccagtcttatatattatgtcctgttttgtttcatccataa |
36765490 |
T |
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Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 45227780 - 45227920
Alignment:
| Q |
60 |
gttttactatgtccatttgcctaaaaa-tttataaactttaaattctttggctttattatgtcactatcagtgatcgatgttgagtttttaaaattacat |
158 |
Q |
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| T |
45227780 |
gttttactatgttcatttgcataaaaaatttataaactttaaattctttggttttattatgtcactatcagtggt----gttgagtttttaaaattacat |
45227875 |
T |
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| Q |
159 |
tattttcccagtcttatatattatgtcctgttttgtttcatccat |
203 |
Q |
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| T |
45227876 |
tattttcccagtcttatatattatgtcctgttttgtttcatccat |
45227920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 28486752 - 28486821
Alignment:
| Q |
136 |
atgttgagtttttaaaattacattattttcccagtcttatatatt-atgtcctgttttgtttcatccata |
204 |
Q |
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| T |
28486752 |
atgttgagtttttgaaactacattattttctcagtattatatattaatgtcctgtgttgtgtcatccata |
28486821 |
T |
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