View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14206_low_8 (Length: 495)

Name: NF14206_low_8
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14206_low_8
NF14206_low_8
[»] chr1 (4 HSPs)
chr1 (15-479)||(8130863-8131345)
chr1 (240-272)||(25061360-25061392)
chr1 (240-272)||(34571085-34571117)
chr1 (240-272)||(43541582-43541614)
[»] chr6 (4 HSPs)
chr6 (347-466)||(33141759-33141874)
chr6 (418-479)||(34620791-34620852)
chr6 (418-479)||(34748228-34748289)
chr6 (240-272)||(10054952-10054984)
[»] chr7 (4 HSPs)
chr7 (431-470)||(15050206-15050245)
chr7 (418-479)||(38123767-38123828)
chr7 (390-464)||(45004905-45004975)
chr7 (230-270)||(7087202-7087242)
[»] chr5 (3 HSPs)
chr5 (419-470)||(28973772-28973823)
chr5 (436-469)||(2973397-2973430)
chr5 (431-479)||(15368148-15368196)
[»] chr2 (4 HSPs)
chr2 (420-470)||(15009756-15009806)
chr2 (418-479)||(40582654-40582715)
chr2 (431-479)||(7629767-7629815)
chr2 (357-401)||(36256073-36256116)
[»] chr3 (3 HSPs)
chr3 (368-405)||(37507460-37507497)
chr3 (368-400)||(12674850-12674882)
chr3 (240-272)||(51285721-51285753)
[»] chr8 (3 HSPs)
chr8 (421-461)||(10203560-10203600)
chr8 (240-296)||(19649250-19649306)
chr8 (431-463)||(35495181-35495213)


Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 15 - 479
Target Start/End: Complemental strand, 8131345 - 8130863
Alignment:
Q  15 atgaagggaatcggagtcgatttcgaagagatcgcttcgcagtaatgcggagaagtttgagtttcaagctgaagtttcaaggcttatggatattatcatt 114  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8131345 atgaagggaatcggagtcgatttcgaagagatcccttcgcagtaatgcggagaagtttgagtttcaagctgaagtttcaaggcttatggatattatcatc 8131246  T
Q  115 aattcgctttacagtaataaagatattttcctcagggaactgatttcaaatgcttctgatgtaagctcattctcttttaagtatacagatatatgctcat 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8131245 aattcgctttacagtaataaggatattttcctcagggaactgatttcaaatgcttctgatgtaagctcattctcttttaagtatacagatatatgctcat 8131146  T
Q  215 tatgtactttttgagttttgaattggtgtgtttggttttgcggtgacaaaaattg--------------attatggcataaagtgagttgaatgtagtct 300  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||    
T  8131145 tatgtactttttgagttttgaatcggtgtgtttggttttgcggtgacaaaaattgattaggtaaaattgattatggcataaagtgagttgaatgtagtct 8131046  T
Q  301 agtttatatttgtattcattgagtctaaaaattagttttagaaaccaaagctttacattctaacttcaagttagaattgattttgaaggcaaaatcaatt 400  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8131045 agtttatatttgtatacattgagtctaaaaattagttttagaaaccaaagctttacattctaacttcaagttagaattgattttgaaggcaaaatcaatt 8130946  T
Q  401 atattagagagcaacccaccaaaca----tatgtaaatcaattctacacttttagaatcaattttggctcctccggaagtgga 479  Q
    |||||||||||||||| ||||||||    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8130945 atattagagagcaaccaaccaaacatatgtatgtaaatcaattctacacttttagaatcaattttggctcctccagaagtgga 8130863  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 25061392 - 25061360
Alignment:
Q  240 gtgtgtttggttttgcggtgacaaaaattgatt 272  Q
    |||||||||||| ||||||||||||||||||||    
T  25061392 gtgtgtttggttctgcggtgacaaaaattgatt 25061360  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 34571085 - 34571117
Alignment:
Q  240 gtgtgtttggttttgcggtgacaaaaattgatt 272  Q
    |||||||||||| ||||||||||||||||||||    
T  34571085 gtgtgtttggttatgcggtgacaaaaattgatt 34571117  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 43541582 - 43541614
Alignment:
Q  240 gtgtgtttggttttgcggtgacaaaaattgatt 272  Q
    |||||||||||| ||||||||||||||||||||    
T  43541582 gtgtgtttggttatgcggtgacaaaaattgatt 43541614  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 466
Target Start/End: Original strand, 33141759 - 33141874
Alignment:
Q  347 aaagctttacattctaacttcaagttagaattgattttgaaggcaaaatcaattatattagagagcaacccaccaaacatatgtaaatcaattctacact 446  Q
    ||||||| | ||||||  ||| |||||||||  ||| || ||| ||||||||||||| | ||||||||||    ||||||||  ||||||||| ||||||    
T  33141759 aaagcttcaaattctaggttctagttagaatcaattctggaggtaaaatcaattatacttgagagcaacc----aaacatatcaaaatcaattttacact 33141854  T
Q  447 tttagaatcaattttggctc 466  Q
      ||||||||||||||||||    
T  33141855 gctagaatcaattttggctc 33141874  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 34620852 - 34620791
Alignment:
Q  418 accaaacatatgtaaatcaattctacacttttagaatcaattttggctcctccggaagtgga 479  Q
    ||||||||| |  ||||||||||||||| ||||||||||||||||| ||||||  |||||||    
T  34620852 accaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtgga 34620791  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 34748289 - 34748228
Alignment:
Q  418 accaaacatatgtaaatcaattctacacttttagaatcaattttggctcctccggaagtgga 479  Q
    ||||||||| |  ||||||||||||||| ||||||||||||||||| ||||||  |||||||    
T  34748289 accaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtgga 34748228  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 10054952 - 10054984
Alignment:
Q  240 gtgtgtttggttttgcggtgacaaaaattgatt 272  Q
    |||||||||||||||||||||||||| ||||||    
T  10054952 gtgtgtttggttttgcggtgacaaaagttgatt 10054984  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 15050245 - 15050206
Alignment:
Q  431 aaatcaattctacacttttagaatcaattttggctcctcc 470  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  15050245 aaatcaattcttcacttctagaatcaattttggctcctcc 15050206  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 479
Target Start/End: Original strand, 38123767 - 38123828
Alignment:
Q  418 accaaacatatgtaaatcaattctacacttttagaatcaattttggctcctccggaagtgga 479  Q
    ||||||||| |  ||||||||||||||  | ||||||||||||||||||||||  |||||||    
T  38123767 accaaacatgttaaaatcaattctacatctctagaatcaattttggctcctccaaaagtgga 38123828  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 464
Target Start/End: Complemental strand, 45004975 - 45004905
Alignment:
Q  390 caaaatcaattatattagagagcaacccaccaaacatatgtaaatcaattctacacttttagaatcaattttggc 464  Q
    |||||||||||||| ||||||| ||||    |||||| |  ||||||||||||||| | ||||||||||||||||    
T  45004975 caaaatcaattatactagagagtaacc----aaacatgtcaaaatcaattctacacctctagaatcaattttggc 45004905  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 7087202 - 7087242
Alignment:
Q  230 ttttgaattggtgtgtttggttttgcggtgacaaaaattga 270  Q
    |||||| || ||||||||||||||| |||||||||||||||    
T  7087202 ttttgactttgtgtgtttggttttgtggtgacaaaaattga 7087242  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 470
Target Start/End: Complemental strand, 28973823 - 28973772
Alignment:
Q  419 ccaaacatatgtaaatcaattctacacttttagaatcaattttggctcctcc 470  Q
    ||||||||||  ||||||||||||||| | |||||||||||| |||||||||    
T  28973823 ccaaacatatcaaaatcaattctacacatctagaatcaatttaggctcctcc 28973772  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 2973397 - 2973430
Alignment:
Q  436 aattctacacttttagaatcaattttggctcctc 469  Q
    ||||||| ||||||||||||||||||||||||||    
T  2973397 aattctatacttttagaatcaattttggctcctc 2973430  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 479
Target Start/End: Complemental strand, 15368196 - 15368148
Alignment:
Q  431 aaatcaattctacacttttagaatcaattttggctcctccggaagtgga 479  Q
    ||||||||||||||  | ||||||||||||||||||||||  |||||||    
T  15368196 aaatcaattctacatatctagaatcaattttggctcctccaaaagtgga 15368148  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 470
Target Start/End: Complemental strand, 15009806 - 15009756
Alignment:
Q  420 caaacatatgtaaatcaattctacacttttagaatcaattttggctcctcc 470  Q
    |||||||||  |||| |||||||||| ||||||||||||||||| ||||||    
T  15009806 caaacatataaaaataaattctacacatttagaatcaattttgggtcctcc 15009756  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 40582715 - 40582654
Alignment:
Q  418 accaaacatatgtaaatcaattctacacttttagaatcaattttggctcctccggaagtgga 479  Q
    ||||||||| |  ||||||||||||||| | |||||||||||||||||| |||  |||||||    
T  40582715 accaaacatgttaaaatcaattctacacctctagaatcaattttggctcttccaaaagtgga 40582654  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 479
Target Start/End: Complemental strand, 7629815 - 7629767
Alignment:
Q  431 aaatcaattctacacttttagaatcaattttggctcctccggaagtgga 479  Q
    ||||||||||||||| | |||||||||| |||||||||||  |||||||    
T  7629815 aaatcaattctacacctctagaatcaatcttggctcctccaaaagtgga 7629767  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 36256073 - 36256116
Alignment:
Q  357 attctaacttcaagttagaattgattttgaaggcaaaatcaatta 401  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||||    
T  36256073 attctaacttcaagt-agaattcattttaaaggcaaaatcaatta 36256116  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 405
Target Start/End: Original strand, 37507460 - 37507497
Alignment:
Q  368 aagttagaattgattttgaaggcaaaatcaattatatt 405  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  37507460 aagttagaatagattttgaaggcaaaattaattatatt 37507497  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 12674850 - 12674882
Alignment:
Q  368 aagttagaattgattttgaaggcaaaatcaatt 400  Q
    ||||||||||| |||||||||||||||||||||    
T  12674850 aagttagaattaattttgaaggcaaaatcaatt 12674882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 51285753 - 51285721
Alignment:
Q  240 gtgtgtttggttttgcggtgacaaaaattgatt 272  Q
    ||||||||||||||||||||| |||||||||||    
T  51285753 gtgtgtttggttttgcggtgagaaaaattgatt 51285721  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 461
Target Start/End: Original strand, 10203560 - 10203600
Alignment:
Q  421 aaacatatgtaaatcaattctacacttttagaatcaatttt 461  Q
    |||||||| |||||||| |||||||||||| ||||||||||    
T  10203560 aaacatatttaaatcaactctacacttttaaaatcaatttt 10203600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 19649306 - 19649250
Alignment:
Q  240 gtgtgtttggttttgcggtgacaaaaattgattatggcataaagtgagttgaatgta 296  Q
    |||||||||||| |||||||  ||||||||||| |||   |||||||||||||||||    
T  19649306 gtgtgtttggttgtgcggtggaaaaaattgattttggttaaaagtgagttgaatgta 19649250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 463
Target Start/End: Complemental strand, 35495213 - 35495181
Alignment:
Q  431 aaatcaattctacacttttagaatcaattttgg 463  Q
    ||||||||||||||||| |||||||||||||||    
T  35495213 aaatcaattctacacttgtagaatcaattttgg 35495181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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