View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14206_low_9 (Length: 488)
Name: NF14206_low_9
Description: NF14206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14206_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 127 - 488
Target Start/End: Original strand, 43864826 - 43865187
Alignment:
| Q |
127 |
gtcataatcttagaatatgttagcatggatttgtggcattcacacactacagcatgcatttgtatacaatctattcacaaagaaaagtgtgaccataata |
226 |
Q |
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| T |
43864826 |
gtcataatcttagaatatgttagcatggatttgtggcatttacacactacagcatgcatttgtatacaatctattcacaaagaaaagtgtgaccataata |
43864925 |
T |
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| Q |
227 |
attttaaacaaatttcataacgttacaaacatggtaattaaactgaaagttgtaactattgatcaattaatttcagtaacagttacaaacatagtaataa |
326 |
Q |
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| T |
43864926 |
attttaaacaaatttcataacgttacaaacatagtaattaaactgaaagttgtaactattgatcaattaatttcactaacagttacaaacatagtaataa |
43865025 |
T |
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| Q |
327 |
aataaaaccttactagaatataaaggtcaggttttttcagaggaaacaattccagccatatttcaattgttctctaattaatgcattgtaactctcgtat |
426 |
Q |
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| T |
43865026 |
aataaaaccttactagaatataaaggtcaggttttttcagaggaaacaattccagccatatttcaattgttctctaattaatgcattgtaactctcgtat |
43865125 |
T |
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| Q |
427 |
aataagaaacacaaattagtgttgacttgtaacacatatgttacatgcaatttctgttacac |
488 |
Q |
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| T |
43865126 |
aataagaaacacaaattagtgttgacttgtaacacatatgttaccttcaatttctgttacac |
43865187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 43864752 - 43864836
Alignment:
| Q |
18 |
atagatagattacaacttcactatgtacaagtgacactaatttcattcatattcataacaaaaagaaataagctaattaagtcataatctt |
108 |
Q |
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| T |
43864752 |
atagatagattacaacttcactatgtacaagtgacactaatttc------attcataacaaaaagaaataagctaattaagtcataatctt |
43864836 |
T |
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