View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14208_high_11 (Length: 212)

Name: NF14208_high_11
Description: NF14208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14208_high_11
NF14208_high_11
[»] chr2 (6 HSPs)
chr2 (1-192)||(5829448-5829639)
chr2 (1-192)||(5768809-5769000)
chr2 (1-186)||(5827268-5827453)
chr2 (47-186)||(5794860-5794999)
chr2 (1-51)||(22142924-22142974)
chr2 (1-51)||(27562806-27562856)
[»] chr6 (2 HSPs)
chr6 (1-188)||(29326962-29327149)
chr6 (145-186)||(3426377-3426418)
[»] chr1 (2 HSPs)
chr1 (1-112)||(33815182-33815293)
chr1 (1-112)||(33874652-33874763)
[»] chr3 (1 HSPs)
chr3 (1-51)||(38508553-38508603)
[»] chr7 (1 HSPs)
chr7 (115-176)||(41174385-41174446)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 5829448 - 5829639
Alignment:
Q  1 tgtcttcccttttcagccaccgccccatttttaattaccgctatagtatcagcccctcgaattgttgtaagacggtgagctaccaccacagtagttctgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5829448 tgtcttcccttttcagccaccgccccatttttaattaccgctatagtatcagcccctcgaattgttgtaagacggtgagctaccaccacagtagttctgt 5829547  T
Q  101 tcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttgggg 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5829548 tcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttgggg 5829639  T

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Target: chr2; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 5769000 - 5768809
Alignment:
Q  1 tgtcttcccttttcagccaccgccccatttttaattaccgctatagtatcagcccctcgaattgttgtaagacggtgagctaccaccacagtagttctgt 100  Q
    ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5769000 tgtcttcccttttcagccaccaccccatttttaatcacggctatagtatcagcccctcgaattgttgtaagacggtgagccaccaccacagtagttctgt 5768901  T
Q  101 tcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttgggg 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5768900 tcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcgtcaagcaaaagtattttgggg 5768809  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 5827453 - 5827268
Alignment:
Q  1 tgtcttcccttttcagccaccgccccatttttaattaccgctatagtatcagcccctcgaattgttgtaagacggtgagctaccaccacagtagttctgt 100  Q
    ||||| ||||| ||||| | | |||||||||| | ||| || ||| ||||||| |||  ||| |||| |||||| ||||| || || |||||||||||||    
T  5827453 tgtctacccttctcagcaatcaccccatttttcactacagcgataatatcagcacctttaatcgttgcaagacgatgagccacaacaacagtagttctgt 5827354  T
Q  101 tcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtatt 186  Q
    | ||||| |||||||||| |||||||||||||| ||| |||||||||||||| |||||||| || ||||||||||| |||||||||    
T  5827353 taacactgactctatctaaagcctcttgaactacacgttctgactcagcatcgagtgcactggttgcctcatcaagtaaaagtatt 5827268  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 5794999 - 5794860
Alignment:
Q  47 tatcagcccctcgaattgttgtaagacggtgagctaccaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactc 146  Q
    ||||||| |||  ||| |||| |||||| ||||| || || |||||||||||||| ||||| |||||||||| |||||||||||||| | | ||||||||    
T  5794999 tatcagcacctttaatcgttgcaagacgatgagccacaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacatgttctgactc 5794900  T
Q  147 agcatcaagtgcacttgtcgcctcatcaagcaaaagtatt 186  Q
    |||||| |||||||| || ||||||||||| |||||||||    
T  5794899 agcatcgagtgcactggttgcctcatcaagtaaaagtatt 5794860  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22142924 - 22142974
Alignment:
Q  1 tgtcttcccttttcagccaccgccccatttttaattaccgctatagtatca 51  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  22142924 tgtcttcccttttcagccacctccccatttttaattacggctatagtatca 22142974  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27562856 - 27562806
Alignment:
Q  1 tgtcttcccttttcagccaccgccccatttttaattaccgctatagtatca 51  Q
    ||||||||||||||||||||| |||| |||||||| || ||||||||||||    
T  27562856 tgtcttcccttttcagccacctccccgtttttaatcacggctatagtatca 27562806  T

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Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 29326962 - 29327149
Alignment:
Q  1 tgtcttcccttttcagccaccgccccatttttaattaccgctatagtatcagcccctcgaattgttgtaagacggtgagctaccaccacagtagttctgt 100  Q
    ||||||||||||||||| |||  ||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||| || |  |||||||||||||    
T  29326962 tgtcttcccttttcagcaaccatcccattttttattactgctatagtatcagcgcctcgaattgttgtaagacgatgagccacgatgacagtagttctgt 29327061  T
Q  101 tcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtatttt 188  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  29327062 tcaaactcactctatctagagcctcttgaactatacgctctgactcggcatcaagtgcacttgttgcctcatcaagcaaaagtatttt 29327149  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 3426377 - 3426418
Alignment:
Q  145 tcagcatcaagtgcacttgtcgcctcatcaagcaaaagtatt 186  Q
    ||||| ||||||||||||||||| |||||||| |||||||||    
T  3426377 tcagcgtcaagtgcacttgtcgcttcatcaagtaaaagtatt 3426418  T

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Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 33815293 - 33815182
Alignment:
Q  1 tgtcttcccttttcagccaccgccccatttttaattaccgctatagtatcagcccctcgaattgttgtaagacggtgagctaccaccacagtagttctgt 100  Q
    ||||||||||||| ||||||| ||  ||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||  |||||||||||||||||||    
T  33815293 tgtcttccctttttagccaccaccttatttttaatcaccgccatagtattagcccctagaattgttgtaagacggtgaggcaccaccacagtagttctgt 33815194  T
Q  101 tcacactcactc 112  Q
    ||||||||||||    
T  33815193 tcacactcactc 33815182  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 33874763 - 33874652
Alignment:
Q  1 tgtcttcccttttcagccaccgccccatttttaattaccgctatagtatcagcccctcgaattgttgtaagacggtgagctaccaccacagtagttctgt 100  Q
    ||||||||||||| ||||||| ||  ||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||  |||||||||||||||||||    
T  33874763 tgtcttccctttttagccaccaccttatttttaatcaccgccatagtattagcccctagaattgttgtaagacggtgaggcaccaccacagtagttctgt 33874664  T
Q  101 tcacactcactc 112  Q
    ||||||||||||    
T  33874663 tcacactcactc 33874652  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38508553 - 38508603
Alignment:
Q  1 tgtcttcccttttcagccaccgccccatttttaattaccgctatagtatca 51  Q
    ||||||||||||||||||||| ||||||||||||| || ||||||||||||    
T  38508553 tgtcttcccttttcagccacctccccatttttaatcacggctatagtatca 38508603  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 41174385 - 41174446
Alignment:
Q  115 tctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaag 176  Q
    ||||| ||||||||||||   | |||||| |||||||||||||||||||| ||||| |||||    
T  41174385 tctagcgcctcttgaactgatctctctgattcagcatcaagtgcacttgttgcctcgtcaag 41174446  T

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