View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14208_high_6 (Length: 311)

Name: NF14208_high_6
Description: NF14208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14208_high_6
NF14208_high_6
[»] scaffold0024 (1 HSPs)
scaffold0024 (37-292)||(72760-73018)
[»] chr8 (7 HSPs)
chr8 (177-248)||(10053663-10053734)
chr8 (181-244)||(41521447-41521510)
chr8 (195-241)||(2420008-2420054)
chr8 (195-241)||(31872741-31872787)
chr8 (192-237)||(118958-119003)
chr8 (204-243)||(39545061-39545100)
chr8 (194-243)||(44607252-44607301)
[»] chr1 (12 HSPs)
chr1 (177-248)||(44978585-44978656)
chr1 (204-245)||(28999968-29000009)
chr1 (211-245)||(9417050-9417084)
chr1 (259-292)||(2236897-2236930)
chr1 (192-240)||(52741622-52741671)
chr1 (210-241)||(22169171-22169202)
chr1 (196-243)||(27690567-27690614)
chr1 (258-292)||(2237976-2238010)
chr1 (205-239)||(33941452-33941486)
chr1 (258-292)||(35684201-35684235)
chr1 (258-291)||(27689368-27689401)
chr1 (190-243)||(37623381-37623434)
[»] chr4 (8 HSPs)
chr4 (190-243)||(39591072-39591125)
chr4 (192-243)||(11113873-11113924)
chr4 (204-243)||(96627-96666)
chr4 (192-243)||(15787437-15787487)
chr4 (197-243)||(26122001-26122047)
chr4 (204-245)||(44664273-44664314)
chr4 (181-243)||(52981072-52981135)
chr4 (183-243)||(35789515-35789575)
[»] chr7 (11 HSPs)
chr7 (181-240)||(38407372-38407431)
chr7 (181-244)||(4168772-4168835)
chr7 (181-243)||(14107963-14108025)
chr7 (181-243)||(14417920-14417982)
chr7 (204-245)||(18670450-18670491)
chr7 (195-243)||(40926456-40926504)
chr7 (211-243)||(4858297-4858329)
chr7 (190-241)||(44114589-44114639)
chr7 (258-292)||(30222730-30222764)
chr7 (258-292)||(41618497-41618531)
chr7 (259-292)||(41126323-41126356)
[»] chr3 (8 HSPs)
chr3 (190-245)||(786371-786426)
chr3 (181-243)||(19622842-19622904)
chr3 (192-238)||(27234645-27234691)
chr3 (190-243)||(34901783-34901836)
chr3 (177-243)||(38639149-38639215)
chr3 (258-292)||(53049035-53049069)
chr3 (258-291)||(39287555-39287588)
chr3 (259-292)||(53047981-53048014)
[»] chr2 (4 HSPs)
chr2 (192-243)||(4701421-4701472)
chr2 (181-244)||(7982442-7982505)
chr2 (190-243)||(41295236-41295289)
chr2 (258-292)||(4513751-4513785)
[»] scaffold0045 (1 HSPs)
scaffold0045 (177-243)||(75876-75942)
[»] chr5 (1 HSPs)
chr5 (190-244)||(7427893-7427947)
[»] scaffold0025 (1 HSPs)
scaffold0025 (190-243)||(54722-54775)
[»] scaffold0177 (1 HSPs)
scaffold0177 (258-292)||(1839-1873)
[»] chr6 (1 HSPs)
chr6 (195-241)||(33807822-33807868)


Alignment Details
Target: scaffold0024 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 37 - 292
Target Start/End: Original strand, 72760 - 73018
Alignment:
Q  37 ctctccattgtggtccttaatctattcaagtatagatggttagtttctttcattttaggaagtttaagaactatgcattgatagtatagaaaaattacat 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  72760 ctctccattgtggtccttaatctattcaagtatagatggttagtttctttcattttaggaagtttaagaactatgcattgatagtatagaaaaattacat 72859  T
Q  137 agatg-----ttatatttcaactttggcgtttatttcataatatcatgagtggttcgttgtaatatactatagacctgcaatcaaacggttataatcata 231  Q
    |||||     ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  72860 agatgtccaattatatttcaactttggcgtttatttcataatatcatgagtggttcactgtaatatactatagacctgcaatcaaacggttataatcata 72959  T
Q  232 ttaaaaatattataattnnnnnnnnnctaacggagaggatcaaaagaggtaacgacagaag 292  Q
    |||||||||||||||||         ||||||||||||| |||||||||||||||||||||    
T  72960 ttaaaaatattataatt--aaaaaaactaacggagaggaccaaaagaggtaacgacagaag 73018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 10053663 - 10053734
Alignment:
Q  177 atgagtggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatattataatt 248  Q
    |||||||||||  ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  10053663 atgagtggttcactgtaatatactacgaacctgcaatcaaacggttataatcatattaaaaatattataatt 10053734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 41521510 - 41521447
Alignment:
Q  181 gtggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatattat 244  Q
    |||||||  ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  41521510 gtggttcactgtaatatactatggaccttcaatctaacggttataatcatattaaaaatattat 41521447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 2420054 - 2420008
Alignment:
Q  195 tatactatagacctgcaatcaaacggttataatcatattaaaaatat 241  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||    
T  2420054 tatactatggacctgcaatcaaacgattataatcatattaaaaatat 2420008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 31872741 - 31872787
Alignment:
Q  195 tatactatagacctgcaatcaaacggttataatcatattaaaaatat 241  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  31872741 tatactatggatctgcaatcaaacggttataatcatattaaaaatat 31872787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 118958 - 119003
Alignment:
Q  192 taatatactatagacctgcaatcaaacggttataatcatattaaaa 237  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||    
T  118958 taatatactatggacctgcaatcaaatgattataatcatattaaaa 119003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 39545100 - 39545061
Alignment:
Q  204 gacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  39545100 gacctgcaatcaaacggtcataatcattttaaaaatatta 39545061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 44607252 - 44607301
Alignment:
Q  194 atatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    |||||| || ||||||||||  |||||| |||||||||||||||||||||    
T  44607252 atatacaatggacctgcaattcaacggtcataatcatattaaaaatatta 44607301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 44978585 - 44978656
Alignment:
Q  177 atgagtggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatattataatt 248  Q
    |||||||||||  ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  44978585 atgagtggttcactgtaatatactacgaacctgcaatcaaacggttataatcatattaaaaatattataatt 44978656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 29000009 - 28999968
Alignment:
Q  204 gacctgcaatcaaacggttataatcatattaaaaatattata 245  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  29000009 gacctgcaatcaaacggctataatcatattaaaaatattata 28999968  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 9417050 - 9417084
Alignment:
Q  211 aatcaaacggttataatcatattaaaaatattata 245  Q
    |||||||||||||||||||||||||||||||||||    
T  9417050 aatcaaacggttataatcatattaaaaatattata 9417084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 2236930 - 2236897
Alignment:
Q  259 taacggagaggatcaaaagaggtaacgacagaag 292  Q
    ||||||||||||||||||||||||||||||||||    
T  2236930 taacggagaggatcaaaagaggtaacgacagaag 2236897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 52741671 - 52741622
Alignment:
Q  192 taatatactatagacctg-caatcaaacggttataatcatattaaaaata 240  Q
    ||||||||||| |||||  |||||||||||||||||||||||||||||||    
T  52741671 taatatactatggacctaacaatcaaacggttataatcatattaaaaata 52741622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 22169171 - 22169202
Alignment:
Q  210 caatcaaacggttataatcatattaaaaatat 241  Q
    ||||||||||||||||||||||||||||||||    
T  22169171 caatcaaacggttataatcatattaaaaatat 22169202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 27690567 - 27690614
Alignment:
Q  196 atactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||||| || |||||||| ||||||||||||||||||| ||||||||    
T  27690567 atactatggatctgcaatcgaacggttataatcatattacaaatatta 27690614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 2237976 - 2238010
Alignment:
Q  258 ctaacggagaggatcaaaagaggtaacgacagaag 292  Q
    ||||||||||||| |||||||||||||||||||||    
T  2237976 ctaacggagaggaccaaaagaggtaacgacagaag 2238010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 33941486 - 33941452
Alignment:
Q  205 acctgcaatcaaacggttataatcatattaaaaat 239  Q
    ||||||||||||||||||| |||||||||||||||    
T  33941486 acctgcaatcaaacggttaaaatcatattaaaaat 33941452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 35684201 - 35684235
Alignment:
Q  258 ctaacggagaggatcaaaagaggtaacgacagaag 292  Q
    ||||||||||||| |||||||||||||||||||||    
T  35684201 ctaacggagaggaccaaaagaggtaacgacagaag 35684235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 27689401 - 27689368
Alignment:
Q  258 ctaacggagaggatcaaaagaggtaacgacagaa 291  Q
    ||||||||||||| ||||||||||||||||||||    
T  27689401 ctaacggagaggaccaaaagaggtaacgacagaa 27689368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 37623434 - 37623381
Alignment:
Q  190 tgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||| ||||||| || |||||||| || |||||||||||||||| ||||||||    
T  37623434 tgtaacatactatggatctgcaatcgaatggttataatcatattacaaatatta 37623381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 39591125 - 39591072
Alignment:
Q  190 tgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39591125 tgtaatatactatggacctgcaatcaaacggttataatcatattaaaaatatta 39591072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 11113924 - 11113873
Alignment:
Q  192 taatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||||||||    
T  11113924 taatatactatggacctgcaatcgaacggttataattatattaaaaatatta 11113873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 96627 - 96666
Alignment:
Q  204 gacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  96627 gacctgcaatcaaacggttattatcatattaaaaatatta 96666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 15787437 - 15787487
Alignment:
Q  192 taatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  15787437 taatatactatggacctgcaatccaacgg-tataatcatattaaaaatatta 15787487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 26122047 - 26122001
Alignment:
Q  197 tactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  26122047 tactatggacctgcaatcgaacggttgtaatcatattaaaaatatta 26122001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 44664273 - 44664314
Alignment:
Q  204 gacctgcaatcaaacggttataatcatattaaaaatattata 245  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  44664273 gacctgcaatcaaacgactataatcatattaaaaatattata 44664314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 52981072 - 52981135
Alignment:
Q  181 gtggttcgttgtaatatactatagacctgcaatcaaacg-gttataatcatattaaaaatatta 243  Q
    |||||||  ||||||||||||| ||| ||||||||||   ||||||||||||||||||||||||    
T  52981072 gtggttcactgtaatatactatggacttgcaatcaaaaaagttataatcatattaaaaatatta 52981135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 35789515 - 35789575
Alignment:
Q  183 ggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||| ||||| |||| |||  |||||||||| |||||| ||||| |||||||||||||||    
T  35789515 ggttcattgtagtataatatgaacctgcaatctaacggtcataattatattaaaaatatta 35789575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 38407372 - 38407431
Alignment:
Q  181 gtggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaata 240  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38407372 gtggttcactgtaatatactatggacctgcaatcaaacggttataatcatattaaaaata 38407431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 4168772 - 4168835
Alignment:
Q  181 gtggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatattat 244  Q
    |||||||  ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  4168772 gtggttcactgtaatatactatggaccttcaatctaacggttataatcatattaaaaatattat 4168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 14108025 - 14107963
Alignment:
Q  181 gtggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    |||||||  |||| |||| ||| |||||||||||||||||||||||| |||||||||||||||    
T  14108025 gtggttcactgtagtatattatggacctgcaatcaaacggttataattatattaaaaatatta 14107963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 14417982 - 14417920
Alignment:
Q  181 gtggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    |||||||  |||| |||| ||| |||||||||||||||||||||||| |||||||||||||||    
T  14417982 gtggttcactgtagtatattatggacctgcaatcaaacggttataattatattaaaaatatta 14417920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 18670450 - 18670491
Alignment:
Q  204 gacctgcaatcaaacggttataatcatattaaaaatattata 245  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  18670450 gacctgcaatcaaacggctataatcatattaaaaatattata 18670491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 40926456 - 40926504
Alignment:
Q  195 tatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||||    
T  40926456 tatactatggaccttaaatcaaacggttataatcatattaaaaatatta 40926504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 4858297 - 4858329
Alignment:
Q  211 aatcaaacggttataatcatattaaaaatatta 243  Q
    |||||||||||||||||||||||||||||||||    
T  4858297 aatcaaacggttataatcatattaaaaatatta 4858329  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 44114589 - 44114639
Alignment:
Q  190 tgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatat 241  Q
    ||||| ||||||| |||||  |||||||||||||||||||||||||||||||    
T  44114589 tgtaacatactatggaccta-aatcaaacggttataatcatattaaaaatat 44114639  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 30222764 - 30222730
Alignment:
Q  258 ctaacggagaggatcaaaagaggtaacgacagaag 292  Q
    ||||||||||||| |||||||||||||||||||||    
T  30222764 ctaacggagaggaccaaaagaggtaacgacagaag 30222730  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 41618497 - 41618531
Alignment:
Q  258 ctaacggagaggatcaaaagaggtaacgacagaag 292  Q
    ||||||||||||| |||||||||||||||||||||    
T  41618497 ctaacggagaggaccaaaagaggtaacgacagaag 41618531  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 41126356 - 41126323
Alignment:
Q  259 taacggagaggatcaaaagaggtaacgacagaag 292  Q
    |||||||||||| |||||||||||||||||||||    
T  41126356 taacggagaggaccaaaagaggtaacgacagaag 41126323  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 786371 - 786426
Alignment:
Q  190 tgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatattata 245  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  786371 tgtaatatactatggacctgcaatcgaacggttataatcatattaaaaatattata 786426  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 19622842 - 19622904
Alignment:
Q  181 gtggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||||| ||||||||||| ||  |||||| ||||||||||||||||||||||||||||||||    
T  19622842 gtggttcattgtaatataccatgtacctgctatcaaacggttataatcatattaaaaatatta 19622904  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 27234645 - 27234691
Alignment:
Q  192 taatatactatagacctgcaatcaaacggttataatcatattaaaaa 238  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  27234645 taatatactatggacctgcaatctaacggttataatcatatcaaaaa 27234691  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 34901836 - 34901783
Alignment:
Q  190 tgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||| ||||||| || |||||||| ||||||||||||||||||| ||||||||    
T  34901836 tgtaacatactatggatctgcaatcgaacggttataatcatattacaaatatta 34901783  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 38639215 - 38639149
Alignment:
Q  177 atgagtggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||||||||   ||||||||||||| ||| |  |||||||| ||||||||||| ||||||||||||    
T  38639215 atgagtggtttactgtaatatactatggacattaaatcaaacagttataatcattttaaaaatatta 38639149  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 53049035 - 53049069
Alignment:
Q  258 ctaacggagaggatcaaaagaggtaacgacagaag 292  Q
    ||||||||||||| |||||||||||||||||||||    
T  53049035 ctaacggagaggaccaaaagaggtaacgacagaag 53049069  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 39287588 - 39287555
Alignment:
Q  258 ctaacggagaggatcaaaagaggtaacgacagaa 291  Q
    ||||||||||||| ||||||||||||||||||||    
T  39287588 ctaacggagaggaccaaaagaggtaacgacagaa 39287555  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 53048014 - 53047981
Alignment:
Q  259 taacggagaggatcaaaagaggtaacgacagaag 292  Q
    |||||||||||| |||||||||||||||||||||    
T  53048014 taacggagaggaccaaaagaggtaacgacagaag 53047981  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 4701421 - 4701472
Alignment:
Q  192 taatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  4701421 taatatactatggacctgcaatcaaacggttataatcatgttaaaaatatta 4701472  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 7982505 - 7982442
Alignment:
Q  181 gtggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatattat 244  Q
    |||||||  ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  7982505 gtggttcactgtaatatactatggaccttcaatctaacggttataatcatattaaaaatattat 7982442  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 41295289 - 41295236
Alignment:
Q  190 tgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    ||||| ||||||| || |||||||| ||||||||||||||||||| ||||||||    
T  41295289 tgtaacatactatggatctgcaatcgaacggttataatcatattacaaatatta 41295236  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 4513751 - 4513785
Alignment:
Q  258 ctaacggagaggatcaaaagaggtaacgacagaag 292  Q
    ||||||||||| |||||||||||||||||||||||    
T  4513751 ctaacggagagaatcaaaagaggtaacgacagaag 4513785  T

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Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 75942 - 75876
Alignment:
Q  177 atgagtggttcgttgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    |||| ||||||  ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||    
T  75942 atgaatggttcactgtaatatattatggacctgcaatcaaacggttattatcatattaaaaatatta 75876  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 7427893 - 7427947
Alignment:
Q  190 tgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatattat 244  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  7427893 tgtaatatactatggaccttcaatctaacggttataatcatattaaaaatattat 7427947  T

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Target: scaffold0025 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 54775 - 54722
Alignment:
Q  190 tgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatatta 243  Q
    |||||||||||||  | |||||||||||||||||||||||||||||||||||||    
T  54775 tgtaatatactatgaatctgcaatcaaacggttataatcatattaaaaatatta 54722  T

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Target: scaffold0177 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 1873 - 1839
Alignment:
Q  258 ctaacggagaggatcaaaagaggtaacgacagaag 292  Q
    ||||||||||||| |||||||||||||||||||||    
T  1873 ctaacggagaggaccaaaagaggtaacgacagaag 1839  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 33807868 - 33807822
Alignment:
Q  195 tatactatagacctgcaatcaaacggttataatcatattaaaaatat 241  Q
    |||||||| |||||  |||||||||||||||||||||| ||||||||    
T  33807868 tatactatggaccttaaatcaaacggttataatcatatgaaaaatat 33807822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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