View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14208_low_1 (Length: 775)
Name: NF14208_low_1
Description: NF14208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14208_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 628 - 759
Target Start/End: Original strand, 21153251 - 21153382
Alignment:
| Q |
628 |
taaatttcacttacatatctaacattgaattgaaacaacattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
727 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21153251 |
taaatttcacttacatatctaacattgaactgaaacatcattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
21153350 |
T |
|
| Q |
728 |
tcacacgttgaattgaaaccttgtaatgaaac |
759 |
Q |
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||||| ||||||||||||| |||||||||||| |
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| T |
21153351 |
tcacatgttgaattgaaactttgtaatgaaac |
21153382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 628 - 756
Target Start/End: Original strand, 21164192 - 21164319
Alignment:
| Q |
628 |
taaatttcacttacatatctaacattgaattgaaacaacattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
727 |
Q |
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|||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21164192 |
taaatttcacttacatatctaacattgact-gaaacatcattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
21164290 |
T |
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| Q |
728 |
tcacacgttgaattgaaaccttgtaatga |
756 |
Q |
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| T |
21164291 |
tcacacgttgaattgaaaccttgtaatga |
21164319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 628 - 759
Target Start/End: Original strand, 21160386 - 21160517
Alignment:
| Q |
628 |
taaatttcacttacatatctaacattgaattgaaacaacattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
727 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21160386 |
taaatttcacttacatttctaacattgaactgaaacatcattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
21160485 |
T |
|
| Q |
728 |
tcacacgttgaattgaaaccttgtaatgaaac |
759 |
Q |
| |
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||||| ||||||||||||| |||||||||||| |
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| T |
21160486 |
tcacatgttgaattgaaactttgtaatgaaac |
21160517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 21153151 - 21153254
Alignment:
| Q |
8 |
ccaagaatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataa |
107 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||| |
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| T |
21153151 |
ccaaaaatattaggaggagcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataa |
21153250 |
T |
|
| Q |
108 |
taaa |
111 |
Q |
| |
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|||| |
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|
| T |
21153251 |
taaa |
21153254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 21160286 - 21160389
Alignment:
| Q |
8 |
ccaagaatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataa |
107 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||| |
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| T |
21160286 |
ccaaaaatattaggaggagcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataa |
21160385 |
T |
|
| Q |
108 |
taaa |
111 |
Q |
| |
|
|||| |
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|
| T |
21160386 |
taaa |
21160389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 21164092 - 21164195
Alignment:
| Q |
8 |
ccaagaatattaggaggggcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataa |
107 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| |
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| T |
21164092 |
ccaaaaatattaggaggagcaacaaatactaacaaattttttaatacaaataatactatagacaggtacgttaagcacaaagtatgcgaagagtagataa |
21164191 |
T |
|
| Q |
108 |
taaa |
111 |
Q |
| |
|
|||| |
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|
| T |
21164192 |
taaa |
21164195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 2717829 - 2717933
Alignment:
| Q |
29 |
acaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaaggataacaaaaagacga |
128 |
Q |
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|||||||||||| | ||||||||| ||||||||| || |||| || |||||||| ||||| ||| |||||||||||| ||||||||||||| || ||| |
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| T |
2717829 |
acaaatactaacta-ttttttaatgcaaataatatcactgacaactatattaagcacaaagtgtgccaagagtagataaaaaaggataacaaagaggcga |
2717927 |
T |
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| Q |
129 |
tacaat |
134 |
Q |
| |
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||||| |
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| T |
2717928 |
aacaat |
2717933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 2718025 - 2718070
Alignment:
| Q |
227 |
aaaagaactttacaatctacttctttggctactctacatgcatatc |
272 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2718025 |
aaaaaaactttacaatgtacttctttggctactctacatgcatatc |
2718070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 22343565 - 22343631
Alignment:
| Q |
126 |
cgatacaatgccaaaacgtcacaaaactacagccaccaaaagaacaaacacaacactaccaaaacct |
192 |
Q |
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||||||||||| |||| | |||||||| || ||||||||| ||||||||||| ||||||||||||| |
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| T |
22343565 |
cgatacaatgctaaaatggcacaaaacaccaaccaccaaaacaacaaacacaaaactaccaaaacct |
22343631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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