View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14208_low_2 (Length: 438)
Name: NF14208_low_2
Description: NF14208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14208_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 6315007 - 6314613
Alignment:
| Q |
18 |
gtgaaccatggtgttcctttggaatttatgtccaatttggaaaatgaagcactaaggtttttcaaaaaaccacagtctgagaaagacagagctggtcctc |
117 |
Q |
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| T |
6315007 |
gtgaaccatggtgttcctttggaatttatgtccaatttggaaaatgaagcactaaggtttttcaaaaaaccacagtctgagaaagacagagctggtcctc |
6314908 |
T |
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| Q |
118 |
ctgatccttttggttatggaagtaagagaattggttcaaatggtgatgttggttgggttgaatatatccttcttaataccaaccctgatgttatctctaa |
217 |
Q |
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| T |
6314907 |
ctgatccttttggttatggaagtaagagaattggttcaaatggtgatgttggttgggttgaatatatccttcttaatactaaccctgatgttatctctaa |
6314808 |
T |
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| Q |
218 |
caagtctctttccttttaccgtgaaaatcgacaaaatctaaggtattgtaatgttatgttttcgttcaaaacagagtcccctgnnnnnnnnnnnnnnnnn |
317 |
Q |
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| T |
6314807 |
caagtctctttccttttaccgtgaaaatcgacaaaatctaaggtattgtaatgttatgttttcgttcaaaacagagtcccctgtttttccttttcaattt |
6314708 |
T |
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| Q |
318 |
nnnaacattagcacggtcaatgttgagaaaaccggaaccgtgatcgtaccgatgagattttaagtttatgatttacttgtttcaatcatggttga |
412 |
Q |
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| T |
6314707 |
tttaacattagcacggtcaatgttgagaaaaccggaaccgtgatcgtaccgatgagattttaagtttatggtttacttgtttcaatcatggttga |
6314613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 38543345 - 38543477
Alignment:
| Q |
96 |
gagaaagacagagctggtcctcctgatccttttggttatggaagtaagagaattggttcaaatggtgatgttggttgggttgaatatatccttcttaata |
195 |
Q |
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| T |
38543345 |
gagaaagagaaagcaggtccacctgatccttttgggtatggaagcaaaattattggtacaaacggtgatgtgggttgggttgaatatcttcttcttaata |
38543444 |
T |
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| Q |
196 |
ccaaccctgatgttatctctaacaagtctcttt |
228 |
Q |
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| T |
38543445 |
ctaacccagatgtcatctctctcaagtctcttt |
38543477 |
T |
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