View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14208_low_3 (Length: 401)
Name: NF14208_low_3
Description: NF14208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14208_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 10904234 - 10903865
Alignment:
| Q |
18 |
aaaatgacatggcatttataaacttgtttccaaatcattttaatttagctgctcttggaacactttaaccagtttaagataattaagaaattaaattagg |
117 |
Q |
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| T |
10904234 |
aaaatgacatggcatttataaatttgtttacaaatcattttaatttagttgctcttggaacactttaac-----taagataattaagaaattaaattagg |
10904140 |
T |
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| Q |
118 |
tcaggtttgatttcactgctgtcgattcgagtggattaagttcatacgaagttatgctctgattttgaattgcctccaacaagtgaaaggtaggattgga |
217 |
Q |
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| T |
10904139 |
tcaggtttgattccactactgtcgattccagtggattaagttcatacgaagttatgctctgattttgaattgcctccaacaagtgaaaggtaggattgga |
10904040 |
T |
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| Q |
218 |
cccttcagattagtcggtccttaagtcagatgctgagttttcaa-aaaattgaaattgaattaggtcaaaataataaga-----gtactggcctaaaact |
311 |
Q |
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| T |
10904039 |
cccttcagattagtcggtccttaagtcagatgctgagttttcaaaaaaaatgaaattgaattatgtcaaaataataagagtttcgtactggcct-aaacc |
10903941 |
T |
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| Q |
312 |
cattccatcaatattacctcgaggtccatttccacaaggggtccaatcaacaagatcatatgtttgtaactgccct |
387 |
Q |
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| T |
10903940 |
cattccatcaatattacctcgaggtccatttccacaaggggtccaatcaacaagatcatatgtttgtaactgccct |
10903865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 38373041 - 38372975
Alignment:
| Q |
197 |
caagtgaaaggtaggattggacccttcagattagtcggtccttaagtcagatgctgagttttcaaaa |
263 |
Q |
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| T |
38373041 |
caagtggacggtgggattggaccccttggattagtcggtccttgggtcagatactgagttttcaaaa |
38372975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 26176259 - 26176191
Alignment:
| Q |
197 |
caagtgaaaggtaggattggacccttcagattagtcggtccttaagtcagatgctgagttttcaaaaaa |
265 |
Q |
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| T |
26176259 |
caagtggacggtgggattggacccttcagattagtcggtccttaggctagatactgacttttcaaaaaa |
26176191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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