View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14208_low_8 (Length: 294)
Name: NF14208_low_8
Description: NF14208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14208_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 3675276 - 3675383
Alignment:
| Q |
47 |
tttaatatattcttacgagactaaatggaaactcattaaatgacaaatatttggtataacataccaaacgaaaattaaaggagttgattcaagcattcaa |
146 |
Q |
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| T |
3675276 |
tttaatatattattacgagattaaatggaaactcattaaatgacaaatatttggtataacataccaaacgaaaattaaaggagttgattcaagcattcaa |
3675375 |
T |
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| Q |
147 |
agaaaatc |
154 |
Q |
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|||||||| |
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| T |
3675376 |
agaaaatc |
3675383 |
T |
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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 3675460 - 3675518
Alignment:
| Q |
230 |
ctgccaaatcagtgcccacattcatatagtccatatttgcattcattgcatgctctcct |
288 |
Q |
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| T |
3675460 |
ctgccaaatcagtgcccacattcatatagtccatatttgcattcattgcatgctctcct |
3675518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 3665834 - 3665916
Alignment:
| Q |
71 |
atggaaactcattaaatgacaaatatttggtataacataccaaacgaaaattaaaggagttgattcaagcattcaaagaaaat |
153 |
Q |
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||||||||| |||||||||||||||||| |||||||||| ||||||||| |||||| |||||||| |||||||||||||| |
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| T |
3665834 |
atggaaactaattaaatgacaaatattttatataacatactgaacgaaaataaaaggatctgattcaaacattcaaagaaaat |
3665916 |
T |
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