View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14209_high_12 (Length: 314)

Name: NF14209_high_12
Description: NF14209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14209_high_12
NF14209_high_12
[»] chr8 (3 HSPs)
chr8 (19-300)||(5050189-5050475)
chr8 (5-236)||(6929296-6929535)
chr8 (6-143)||(15146661-15146793)
[»] chr2 (5 HSPs)
chr2 (3-235)||(18087918-18088158)
chr2 (7-236)||(20140044-20140281)
chr2 (59-235)||(27129064-27129235)
chr2 (82-231)||(2217100-2217256)
chr2 (9-37)||(27129233-27129261)
[»] chr4 (2 HSPs)
chr4 (74-235)||(9835311-9835479)
chr4 (85-224)||(22281896-22282043)
[»] chr3 (2 HSPs)
chr3 (8-207)||(1278930-1279137)
chr3 (9-144)||(54415482-54415617)
[»] chr5 (1 HSPs)
chr5 (78-249)||(4124274-4124452)
[»] chr6 (1 HSPs)
chr6 (21-236)||(31442215-31442438)
[»] chr7 (3 HSPs)
chr7 (85-233)||(36187237-36187392)
chr7 (154-235)||(36187409-36187490)
chr7 (162-249)||(30069585-30069672)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 5050189 - 5050475
Alignment:
Q  19 atgtttactttcctcctttctcaatgcatttatccttttattttttgttacttcattctctcttcatgtatcatctaatcattctctcttccttatatta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5050189 atgtttactttcctcctttctcaatgcatttatccttttattttttgttgcttcattctctcttcatgtattatctaatcattctctcttccttatatta 5050288  T
Q  119 gagttgttgtttgttgattc-------ttatttatttttcagaggcaacacttttgatgcatgcacacaatatctgatgaaaaggttcaacaacttcttt 211  Q
    || || ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5050289 gaattattgtttgttgattcttattttttatttatttttcagaggcaacacttttgatgcatgcacacaatatctgatgaaaaggttcaacaacttcttt 5050388  T
Q  212 actcattcttatcccatgttattacactctatattaatatgcnnnnnnnnnnnngtaatatttggttttcattttgcaatgtctagtat 300  Q
    ||||||||||||||||||||||||| ||||||| ||||||||            |||||||||||||||||||||||||||||| ||||    
T  5050389 actcattcttatcccatgttattactctctataataatatgc--caaaaaaaaagtaatatttggttttcattttgcaatgtctggtat 5050475  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 6929535 - 6929296
Alignment:
Q  5 gttacaacaattgcatgtttactttcctcctttctcaatgcatttatccttttattttttgttacttcattctctcttcatgtatcatctaatcattctc 104  Q
    |||||||||||||||  ||||||||||| |||||||||| |||| ||| |  | ||  |||||| ||||||||||||||||||||  ||| ||||||| |    
T  6929535 gttacaacaattgcacatttactttcctactttctcaatacattcatcttcct-ttggttgttatttcattctctcttcatgtatagtctcatcattccc 6929437  T
Q  105 tcttccttatattagagttgttgtttgttgattctt--------atttatttttcagag-gcaacacttttgatgcatgcacacaatatctgatgaaaag 195  Q
    ||||| ||||||||||||||||| ||||||||||||        |||||||||| ||||   ||||||||| ||||||||||||||||| ||||| |||     
T  6929436 tcttctttatattagagttgttgattgttgattcttattttttgatttatttttaagagaaaaacactttttatgcatgcacacaatatttgatggaaaa 6929337  T
Q  196 gttcaacaacttctttactcattcttatcccatgttattac 236  Q
    ||||||||||||||||| ||||| ||||| |||||||||||    
T  6929336 gttcaacaacttctttattcatttttatctcatgttattac 6929296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 15146661 - 15146793
Alignment:
Q  6 ttacaacaattgcatgtttactttcctcctttctcaatgcatttatccttttattttttgttacttcattctctcttcatgtatcatctaatcattctct 105  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||   || ||||||| || ||| ||||| ||||||||||| | | |||||||||     
T  15146661 ttacaacaattgcagatttactttcctcctttctcaatacatttatc---ttcttttttggtatttccttctcgcttcatgtatcttgtcatcattctc- 15146756  T
Q  106 cttccttatattagagttgttgtttgttgattcttatt 143  Q
     |||||||||||||||||||||||||||||||||||||    
T  15146757 -ttccttatattagagttgttgtttgttgattcttatt 15146793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 18088158 - 18087918
Alignment:
Q  3 ttgttacaacaattgcatgtttactttcctcctttctcaatgcatttatccttttattttttgttacttcattctctcttcatgtatcatctaatcattc 102  Q
    |||| ||||||||||||||||||||||||||||| ||  || |||||||| || | |||||||||| ||| || |||||||||||||||||| |||||||    
T  18088158 ttgtaacaacaattgcatgtttactttcctccttccttgatccatttatctttct-ttttttgttatttccttatctcttcatgtatcatctcatcattc 18088060  T
Q  103 tctcttccttatattagagttgttgtttgttgattcttatttattt---------ttcagaggcaacacttttgatgcatgcacacaatatctgatgaaa 193  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||         ||||||||||||||||||||| ||| |||| ||||| ||||||||    
T  18088059 tctcttccttatattagagttgttgttggttgattcttatttttttatttatttgttcagaggcaacacttttgatccatacacataatatttgatgaaa 18087960  T
Q  194 aggttcaacaacttctttactcattcttatcccatgttatta 235  Q
    | |||||||||||| |||| |||||||||||| |||||||||    
T  18087959 aagttcaacaacttttttaatcattcttatcctatgttatta 18087918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 20140281 - 20140044
Alignment:
Q  7 tacaacaattgcatgtttactttcctcctttctcaatgcatttatccttttatttt-ttgttacttcattctctcttcatgtatcatctaatcattctct 105  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||| || ||||||||  |||||  ||| ||||||||||||||||||||| ||||||| ||    
T  20140281 tacaacaattgcatgtttactttcctcctgtcttaatacatttctctttttatttggttgttttttccttctctcttcatgtatcatctcatcattccct 20140182  T
Q  106 cttccttatattagagttgttgtttgttgattctt-------atttatttttcagaggcaacacttttgatgcatgcacacaatatctgatgaaaaggtt 198  Q
    ||| |||||||||||||| || |||||||||| ||       |||||||| | |||||||||| |||| |||||||||||||||||   |||  || |||    
T  20140181 ctttcttatattagagttattctttgttgatttttatttttaatttatttattagaggcaacattttttatgcatgcacacaatattgaatgggaaagtt 20140082  T
Q  199 caacaacttctttactcattcttatcccatgttattac 236  Q
    |||||||||||||| |||||||||||||||||||||||    
T  20140081 caacaacttctttattcattcttatcccatgttattac 20140044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 235
Target Start/End: Complemental strand, 27129235 - 27129064
Alignment:
Q  59 ttttttgttacttcattctctcttcatgtatcatctaatcattctctcttccttatattagagttgttgtttgttgattcttatttatttttcagaggca 158  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||  |||||| ||  ||||   |||||||||||||    
T  27129235 ttttttgttatttccttctctcttcatgtatcatctcatcattctctcttccttatattaaagttgtgttttgtttat--ttat---tttttcagaggca 27129141  T
Q  159 acacttttgatgcatgcacacaatatctgatgaaaaggttcaacaacttctttactcattcttatcccatgttatta 235  Q
    |||||||| ||||||||| ||||||| ||||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  27129140 acacttttcatgcatgcagacaatatttgatgaaaaagttcaacaactttcttactcattcttatcccatgttatta 27129064  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 2217256 - 2217100
Alignment:
Q  82 tcatgtatcatctaatcattctctcttccttatatt-agagttgttgtttgttgattc-------ttatttatttttcagaggcaacacttttgatgcat 173  Q
    |||||||||||   || |||| || ||||||||||| |||||||||||||||||||||       |||||||||||| |||||||||||||||||| | |    
T  2217256 tcatgtatcattgcattattcccttttccttatatttagagttgttgtttgttgattcctattttttatttattttttagaggcaacacttttgatactt 2217157  T
Q  174 gcacacaatatctgatgaaaaggttcaacaacttctttactcattcttatcccatgtt 231  Q
    |||||||| ||  |||| ||| ||||||||||||||||| ||||||||||| ||||||    
T  2217156 gcacacaa-attggatggaaaagttcaacaacttctttattcattcttatctcatgtt 2217100  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 27129261 - 27129233
Alignment:
Q  9 caacaattgcatgtttactttcctccttt 37  Q
    |||||||||||||||||||||||||||||    
T  27129261 caacaattgcatgtttactttcctccttt 27129233  T

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Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 9835479 - 9835311
Alignment:
Q  74 ttctctcttcatgtatcatctaatcattctctcttccttatattagagttgttgtttgttgattcttattt---attt---ttc-agaggcaacactttt 166  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||   ||||   ||| ||||| |||||||||    
T  9835479 ttctttcttcatgtatcatctcatcattctctcttctttatattagagttgttgtttgttgatttttatttttgatttaatttctagaggtaacactttt 9835380  T
Q  167 gatgcatgcacacaatatctgatgaaaaggttcaacaacttctttactcattcttatcccatgttatta 235  Q
    |||||||||| |||||||  |||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  9835379 gatgcatgcatacaatattcgatggaaaagttcaacaacttctttactcattcttatcccatgttatta 9835311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 22282043 - 22281896
Alignment:
Q  85 tgtatcatctaatcattctctcttccttatattagagttgttgttt-gttgattct-------tatttatttttcagaggcaacacttttgatgcatgca 176  Q
    |||||||||| ||||||  ||||||| ||||||| ||||||| ||| |||||||||       ||||||||||||  ||||||||| |||||||||| ||    
T  22282043 tgtatcatctcatcatttcctcttccatatattaaagttgtttttttgttgattctcatttgttatttatttttccaaggcaacacatttgatgcatcca 22281944  T
Q  177 cacaatatctgatgaaaaggttcaacaacttctttactcattcttatc 224  Q
    ||||||||  ||||  || ||||||||||||||||| |||||||||||    
T  22281943 cacaatattggatgggaaagttcaacaacttctttattcattcttatc 22281896  T

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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 1279137 - 1278930
Alignment:
Q  8 acaacaattgcatgtttactttcctcctttctcaatgcatttatccttttatttt-ttgttacttcattctctcttcatgtatcatctaatcattctctc 106  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||| |||| |||  |||||| ||| |||||| |||||||||||||  |||| || |||    
T  1279137 acaacaatttcatgtttactttcctcttttctcaatacatttatctttttctttaattgttatttccttctctattcatgtatcatcgcatcactccctc 1279038  T
Q  107 ttccttatattagagttgttgtttgttgattctt-------atttatttttcagaggcaacacttttgatgcatgcacacaatatctgatgaaaaggttc 199  Q
    ||||||||||||||||||||| ||| ||||||||       |||||||||| ||||||||||||||||||| ||||||||||| | |||||| || ||||    
T  1279037 ttccttatattagagttgttgcttggtgattcttattttttatttattttttagaggcaacacttttgatgtatgcacacaatctttgatgagaaagttc 1278938  T
Q  200 aacaactt 207  Q
    ||||||||    
T  1278937 aacaactt 1278930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 54415482 - 54415617
Alignment:
Q  9 caacaattgcatgtttactttcctcctttctcaatgcatttatccttttatttt-ttgttacttcattctctcttcatgtatcatctaatcattctctct 107  Q
    ||||||||||| |||| |||||||| ||||||||| ||||| || |||| |||  |||||| ||| |||||||||||||||||||||  |||||| ||||    
T  54415482 caacaattgcacgtttgctttcctcatttctcaatacatttctctttttctttggttgtta-ttccttctctcttcatgtatcatctcttcattccctct 54415580  T
Q  108 tccttatattagagttgttgtttgttgattcttattt 144  Q
    || ||||||||||||||||||||||||||||||||||    
T  54415581 tcattatattagagttgttgtttgttgattcttattt 54415617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 4124274 - 4124452
Alignment:
Q  78 ctcttcatgtatcatctaatcattctctcttccttatattagagttgttgtttgttgattcttatttattt-------ttcagaggcaacacttttgatg 170  Q
    |||||||||||| || | ||||||||| |||  ||||||||||||||||||||||||||||||||||||||       || | |||||| ||||||||||    
T  4124274 ctcttcatgtattatatcatcattctcacttttttatattagagttgttgtttgttgattcttatttatttatttatttttaaaggcaatacttttgatg 4124373  T
Q  171 catgcacacaatatctgatgaaaaggttcaacaacttctttactcattcttatcccatgttattacactctatattaat 249  Q
    |||||||||||||| ||||| ||| ||| ||||||||||||||||||| ||||| |||||||||||  |||||| ||||    
T  4124374 catgcacacaatatttgatggaaaagtttaacaacttctttactcatttttatctcatgttattactttctataataat 4124452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 31442438 - 31442215
Alignment:
Q  21 gtttactttcctcctttctcaatgcatttatccttttatttt-ttgttacttcattctctcttcatgtatcatctaatcattctctcttccttatattag 119  Q
    ||||||||||| ||||||||||| ||||| || |||| |||  |||||| ||| ||||| | ||||||||||||| ||| |||  |||||||| |  |||    
T  31442438 gtttactttccacctttctcaatacatttctctttttctttggttgttatttccttctcccctcatgtatcatctcatctttccttcttccttgtgctag 31442339  T
Q  120 agttgttgtttgttgattctt-------atttatttttcagaggcaacacttttgatgcatgcacacaatatctgatgaaaaggttcaacaacttcttta 212  Q
    |||||||||||||||||||||       ||||||||||  | |||| ||||||| ||||| ||||||||||| ||||| ||| ||||||||||||  |||    
T  31442338 agttgttgtttgttgattcttatttttgatttattttttgggggcatcacttttaatgcaagcacacaatatttgatggaaaagttcaacaactttctta 31442239  T
Q  213 ctcattcttatcccatgttattac 236  Q
     |||||||||||||||||||||||    
T  31442238 ttcattcttatcccatgttattac 31442215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 36187237 - 36187392
Alignment:
Q  85 tgtatcatctaatcattctctcttccttatattagagttgttgtttgttgattct-------tatttatttttcagaggcaacacttttgatgcatgcac 177  Q
    |||||||||| |||| |  ||||||| ||||||||||||||||||||||||||||       ||||||||||||  ||||||||| |||||||||| |||    
T  36187237 tgtatcatctcatcacttcctcttccatatattagagttgttgtttgttgattctgattttttatttatttttccaaggcaacacatttgatgcatccac 36187336  T
Q  178 acaatatctgatgaaaaggttcaacaacttctttactcattcttatcccatgttat 233  Q
    | |||||  ||||  || ||||||||||||||||| ||||||||||  ||||||||    
T  36187337 ataatattggatgggaaagttcaacaacttctttattcattcttattgcatgttat 36187392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 36187409 - 36187490
Alignment:
Q  154 aggcaacacttttgatgcatgcacacaatatctgatgaaaaggttcaacaacttctttactcattcttatcccatgttatta 235  Q
    ||||||||| |||||||||| | ||||||||  ||||  || ||||||||||||||||| ||||||||||  ||||||||||    
T  36187409 aggcaacacatttgatgcatccgcacaatattagatgggaaagttcaacaacttctttattcattcttattgcatgttatta 36187490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 30069585 - 30069672
Alignment:
Q  162 cttttgatgcatgcacacaatatctgatgaaaaggttcaacaacttctttactcattcttatcccatgttattacactctatattaat 249  Q
    ||||||||  ||||| ||||||| ||||||||| ||| ||| |||||||| ||||||||| || |||||||||||  |||||| ||||    
T  30069585 cttttgatcaatgcatacaatatttgatgaaaatgtttaactacttctttgctcattcttttctcatgttattactttctataataat 30069672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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