View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14209_high_8 (Length: 333)
Name: NF14209_high_8
Description: NF14209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14209_high_8 |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 20286460 - 20286138
Alignment:
| Q |
11 |
cagagaccggaaaggaaaagggaagagttgttaccggtagcgtgttgtttgatccagcttgatggaaaagcttcattgaaaaaagcggtatccgtgaaac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20286460 |
cagagaccggaaaggaaaagggaagagttgttaccggtagcgtgttgtttgatccagcttgatggaaaagcttcgttgaaaaaagcggtatccgtgaaac |
20286361 |
T |
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| Q |
111 |
cgagccggtgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20286360 |
cgagccggtgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggc |
20286261 |
T |
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| Q |
211 |
catatgacggtgttcaagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatc |
310 |
Q |
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| T |
20286260 |
catatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaatgaacagtttgaatttttcaggggactttagcttccatatc |
20286161 |
T |
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| Q |
311 |
caagaccaagagtgggtagaaag |
333 |
Q |
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| T |
20286160 |
caagaccaagagtgggtagaaag |
20286138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 24530432 - 24530358
Alignment:
| Q |
133 |
ggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagaggg |
207 |
Q |
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| T |
24530432 |
ggagaaactacaatcacgaaggcaatgcaggatagtttcatcgtcctccccacatctcgaacaggtagtagaggg |
24530358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 11898759 - 11898437
Alignment:
| Q |
11 |
cagagaccggaaaggaaaagggaagagttgttaccggtagcgtgttgtttgatccagcttgatggaaaagcttcattgaaaaaagcggtatccgtgaaac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11898759 |
cagagaccggaaaggaaaagggaagagttgttaccggtagcgtgttgtttgatccagcttgatggaaaagcttcgttgaaaaaagcggtatccgtgaaac |
11898660 |
T |
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| Q |
111 |
cgagccggtgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggc |
210 |
Q |
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| T |
11898659 |
cgagccggtgccaaataatggaggagaaacgacaataccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggc |
11898560 |
T |
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| Q |
211 |
catatgacggtgttcaagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatc |
310 |
Q |
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| T |
11898559 |
catatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagctaaccaaataaacagtttgaatttttcaggggactttagcttccatatc |
11898460 |
T |
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| Q |
311 |
caagaccaagagtgggtagaaag |
333 |
Q |
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||||||||||||||||||||||| |
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| T |
11898459 |
caagaccaagagtgggtagaaag |
11898437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 318
Target Start/End: Original strand, 26431342 - 26431541
Alignment:
| Q |
119 |
tgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggccatatgac |
218 |
Q |
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|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||| || || || ||||| |||| |
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| T |
26431342 |
tgccaaatgatggaagagaaacgacagtcccgaaggcaatgcataatggtttcttcgtcttcgccacatcgcgaacaggttgaggaaggagccatctgac |
26431441 |
T |
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| Q |
219 |
ggtgttcaagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatccaagacca |
318 |
Q |
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| T |
26431442 |
ggtggtggagaagtgataaagtcgggatcgcattgtggcaagccaaccaaatcaacagattgaatttttctgcggtctttagcttccatatccaagacca |
26431541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 23131121 - 23131443
Alignment:
| Q |
11 |
cagagaccggaaaggaaaagggaagagttgttaccggtagcgtgttgtttgatccagcttgatggaaaagcttcattgaaaaaagcggtatccgtgaaac |
110 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
23131121 |
cagagaccagaaaggaaaagggaagagttgttaccagtagcgtgttgtttgatccagctttatggaaaagcttcgttgaaaaaagcggtatccgtgaaac |
23131220 |
T |
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| Q |
111 |
cgagccggtgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggc |
210 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23131221 |
cgagccggtgccaaataattgaggagaaatgacaatcccgaaggcaatgcataatggtttcttcgtcttctccacatctggaacaggtggaagagggggc |
23131320 |
T |
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| Q |
211 |
catatgacggtgttcaagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccatatc |
310 |
Q |
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||||||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23131321 |
catatgacggtgttcgaaaagagacattgtcggaatggcgttatggcaagctaaccaaatcaacagtttgaatttttcaggggactttagcttccataac |
23131420 |
T |
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| Q |
311 |
caagaccaagagtgggtagaaag |
333 |
Q |
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||||||||||||||||||||||| |
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| T |
23131421 |
caagaccaagagtgggtagaaag |
23131443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 79 - 330
Target Start/End: Original strand, 14652284 - 14652535
Alignment:
| Q |
79 |
agcttcattgaaaaaagcggtatccgtgaaaccgagccggtgccaaataatggaggagaaacgacaatcccgaaggcaatgcataatggtttcttcgtct |
178 |
Q |
| |
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||||||||||| |||| || |||| || ||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
14652284 |
agcttcattgagaaaaacgttatcagtaaaaccgagctggtaccaaataatggaggagaagcgacaatcccgaaggcaatgcattatggtttcttcgtct |
14652383 |
T |
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| Q |
179 |
tctccacatctggaacaggtggaagagggggccatatgacggtgttcaagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacagtt |
278 |
Q |
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||||||||||| |||||||| |||||||| |||||||| ||||||| |||||||| | ||||||||| |||||||||||||| | |||||||||||||| |
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| T |
14652384 |
tctccacatctcgaacaggtagaagagggagccatatgtcggtgttggagaagagatagagtcgggatcgcgttatggcaagccagccaaatcaacagtt |
14652483 |
T |
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| Q |
279 |
tgaatttttcaggggactttagcttccatatccaagaccaagagtgggtaga |
330 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14652484 |
tgaatttttcgggggattttagcttccatatccaagaccaagagtgggtaga |
14652535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 53321340 - 53321255
Alignment:
| Q |
191 |
gaacaggtggaagagggggccatatgacggtgttcaagaagagacatagtcgggatggcgttatggcaagctaaccaaatcaacag |
276 |
Q |
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||||||||||| ||||| ||||| |||||||| | ||||| || | ||||||||| || || |||||||| | |||||||||||| |
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| T |
53321340 |
gaacaggtggaggagggagccatttgacggtgatggagaagtgataaagtcgggatcgcattgtggcaagccagccaaatcaacag |
53321255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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