View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14209_high_9 (Length: 329)
Name: NF14209_high_9
Description: NF14209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14209_high_9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 21111415 - 21111113
Alignment:
| Q |
30 |
cttttcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattgact--tttgttcattatcttgatggaaaaggctata |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21111415 |
cttttcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattgactcttttgttcattatcttgatggaaaaggctata |
21111316 |
T |
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| Q |
128 |
tgagaatcaaagctatgtgttggtttctgcatttttctttgccattgtagagtgctta--acagaggcattagttccttaggttgcagccactcggactt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21111315 |
tgagaatcaaagctatgtgttggtttctgcatttttctttgccattgtagagtgcttaacacagaggcattagttccttaggttgcagccactcggactt |
21111216 |
T |
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| Q |
226 |
cgaacccaagcactgcttgtgactatgatatataataaagccttaacactttcaggtcaattaagacagtgccatacttatggagaaataatcaatttca |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21111215 |
cgaacccaagcactgcttgtgactatgatatataataaagcctcaacactttcaggt-aattaagacagtgccatacttatggagaaataatcaatttca |
21111117 |
T |
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| Q |
326 |
tgac |
329 |
Q |
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|||| |
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| T |
21111116 |
tgac |
21111113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 41452998 - 41452691
Alignment:
| Q |
30 |
cttttcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattgact--tttgttcattatcttgatggaaaa-ggctat |
126 |
Q |
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| T |
41452998 |
ctttttactgcttttcttgcattattaaacacttttgcttcttatgttggtccttatcttattgactcttttgttcaataccttgatggaaaaaggctat |
41452899 |
T |
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| Q |
127 |
atgagaatcaaagctatgtgttggtttctgcatttttctttgcca---ttgtagagtgcttaaca--gaggcattagttccttaggttgcagccactcgg |
221 |
Q |
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| T |
41452898 |
acgagaatcaaggctatgtgttggtttctgcatttttctttgcaaagcttgtagagtgcttaacacagaggcattggttctttaggttgcagcaactcgg |
41452799 |
T |
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| Q |
222 |
acttcgaacccaagcactgcttgtgactatgatatataataaagccttaacactttcaggtcaattaagacagtgccatacttatggagaaataatcaat |
321 |
Q |
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| T |
41452798 |
acttcgaacccgagcactgcttgtgactatgatatatagtaaagccttaacactttcaggtcaatcaagacagtgccatacttctggagaaataatcaat |
41452699 |
T |
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| Q |
322 |
ttcatgac |
329 |
Q |
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|||||||| |
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| T |
41452698 |
ttcatgac |
41452691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 41439829 - 41439522
Alignment:
| Q |
30 |
cttttcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattgact--tttgttcattatcttgatggaaaa-ggctat |
126 |
Q |
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|||||||||| ||||||| ||||||| || | |||||||||||||| ||||||||| |||||||||| |||||||| || |||||||||||| |||||| |
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| T |
41439829 |
cttttcactgcttttcttacattgttgaaaacttttgcttcttatgttggtccttatcttattgactcttttgttcaataccttgatggaaaaaggctat |
41439730 |
T |
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| Q |
127 |
atgagaatcaaagctatgtgttggtttctgcatttttctttgcca---ttgtagagtgcttaaca--gaggcattagttccttaggttgcagccactcgg |
221 |
Q |
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| T |
41439729 |
acgagaatcaaggctatgtgtttgtttctgcatttttctttgcaaagcttgtagagtgcttaacacagaggcattggttctttaggttgcagcaattcgg |
41439630 |
T |
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| Q |
222 |
acttcgaacccaagcactgcttgtgactatgatatataataaagccttaacactttcaggtcaattaagacagtgccatacttatggagaaataatcaat |
321 |
Q |
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|||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
41439629 |
actttgaacccgagcactgcttgtgactatgatatatggtaaagccttaacactttcaggtcaatcaagacagtgccatacctctggagaaataatcaat |
41439530 |
T |
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| Q |
322 |
ttcatgac |
329 |
Q |
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|||||||| |
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| T |
41439529 |
ttcatgac |
41439522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 34 - 329
Target Start/End: Original strand, 14371342 - 14371645
Alignment:
| Q |
34 |
tcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattga--cttttgttcattatcttgatggaaaa-ggctatatga |
130 |
Q |
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|||||| || |||||||||| |||||| |||| || |||||| ||| ||||| |||||||| |||||||||| || |||||||||||| |||||||||| |
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| T |
14371342 |
tcactgcttctcttgcattggtaaacactttttctacttatgttggcccttatcttattgattcttttgttcaataccttgatggaaaaaggctatatga |
14371441 |
T |
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| Q |
131 |
gaatcaaagctatgtgttggtttctgcatttttctttgcca---ttgtagagtgcttaacaga--ggcattagttccttaggttgcagccactcggactt |
225 |
Q |
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||||||| ||||||||||||||||| | ||||||||||| | ||||||| |||||||| | |||| ||||| |||||||||||| |||||||||| |
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| T |
14371442 |
gaatcaaggctatgtgttggtttcttcctttttctttgcaaagcttgtagaaagcttaacaaacaggcagcagttctttaggttgcagcaactcggactt |
14371541 |
T |
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| Q |
226 |
cgaacccaagcactgcttgtgactatgatatataataaagccttaacactttcaggtcaattaagacagtgccatacttatggagaaataatcaatttca |
325 |
Q |
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|||| |||||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||| ||||| || |||| |||||||||||||||||||| |
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| T |
14371542 |
cgaatccaagcactgcttgtgacattgatatataacaaagccttaacactttcatctcaatcaaggcagtgtcacacttctggagaaataatcaatttca |
14371641 |
T |
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| Q |
326 |
tgac |
329 |
Q |
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|||| |
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| T |
14371642 |
tgac |
14371645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 34 - 326
Target Start/End: Complemental strand, 14241979 - 14241679
Alignment:
| Q |
34 |
tcactgtttttcttgcattgttaaacaattttgcttcttatggtggtccttaacttattga--cttttgttcattatcttgatggaaaa-ggctatatga |
130 |
Q |
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|||||| ||||||||||||| |||||| |||| || |||||| ||||||||| |||||||| |||||||||| || |||| |||||| || ||||||| |
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| T |
14241979 |
tcactgcttttcttgcattggtaaacactttttctacttatgttggtccttatcttattgattcttttgttcaatacattgacggaaaaaggttatatga |
14241880 |
T |
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| Q |
131 |
gaatcaaagctatgtgttggtttctgcatttttctttgcca---ttgtagagtgcttaacaga--ggcattagttccttaggttgcagccactcggactt |
225 |
Q |
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| T |
14241879 |
gaatcaaggctatgtgttggtttcttcctttttatttgcaaagcttgtagagtgcttaacagaaagacatttgtactttaggttgcagcaactaggactt |
14241780 |
T |
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| Q |
226 |
cgaacccaagcactgcttgtgactatgatatataataaagccttaacactttcaggtcaattaagacagtgccatacttatggagaaataatcaatttca |
325 |
Q |
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|||| || |||||||||||||| || ||||||||||||||||||||||||||| |||||| || ||||| || | || ||||||||| |||||||||| |
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| T |
14241779 |
cgaatccgtgcactgcttgtgacgatcatatataataaagccttaacactttcatgtcaatcaaagcagtgtcacagttctggagaaattatcaatttca |
14241680 |
T |
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| Q |
326 |
t |
326 |
Q |
| |
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| |
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|
| T |
14241679 |
t |
14241679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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