View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1420_high_12 (Length: 418)

Name: NF1420_high_12
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1420_high_12
NF1420_high_12
[»] chr6 (3 HSPs)
chr6 (1-404)||(15087633-15088036)
chr6 (246-404)||(15084055-15084213)
chr6 (37-152)||(15083846-15083961)


Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 15087633 - 15088036
Alignment:
Q  1 aagttccactttctctttacgctttgtccctgtcgacccaccaacctctcctccttccttcctcggcgccattgtgtactctggtggagctcctgttgtc 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15087633 aagttccactttctctttacgttttgtccctgtcgacccaccaacctctcctccttccttcctcgccgccattgtgtactctggtggagctcctgttgtc 15087732  T
Q  101 tggacagcaggtaactccaccgctgtcgactccggtggttccttccagtttcttaccaatggcaaccttcgtctcattaacggttctggcgccaccgtct 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15087733 tggacagcaggtaactccaccgctgtcgactccagtggttccttccagtttcttaccaacggcaaccttcgtctcattaacggttctggcgccaccgtct 15087832  T
Q  201 gggactctgggactgctaatatgggtgcaacatcagccactgttgaagacagtggtaaattggcgattttgaacggaacgaaggaagtttggtcgagctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15087833 gggactctgggactgctaatatgggtgcaacatcagccactgttgaagacagtggtaaattggcgattttgaacggaacaaaggaagtttggtcgagctt 15087932  T
Q  301 tgatcatcttacagatatccttttgccttctcagaattttactgttggtaaggttttgaaatctggtgattatagttttagtcttggaaagaatggtaat 400  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15087933 tgatcatcttacagatacccttttgccttctcagaattttactgttggtaagattttgaaatctggtgattatagttttagtcttggaaagaatggtaat 15088032  T
Q  401 ttga 404  Q
    ||||    
T  15088033 ttga 15088036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 246 - 404
Target Start/End: Original strand, 15084055 - 15084213
Alignment:
Q  246 aagacagtggtaaattggcgattttgaacggaacgaaggaagtttggtcgagctttgatcatcttacagatatccttttgccttctcagaattttactgt 345  Q
    |||| ||||| |||||||  |||||||| || || |||||||||||||| |||||||||||||||||||||| ||||||||| |||   ||||||| |||    
T  15084055 aagatagtggcaaattggtcattttgaatgggacaaaggaagtttggtcaagctttgatcatcttacagatacccttttgccatctacaaattttagtgt 15084154  T
Q  346 tggtaaggttttgaaatctggtgattatagttttagtcttggaaagaatggtaatttga 404  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  15084155 tggtaaggtattgaaatctggtgattatagttttagtcttgcaaagattggtaatttga 15084213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 15083846 - 15083961
Alignment:
Q  37 cccaccaacctctcctccttccttcctcggcgccattgtgtactctggtggagctcctgttgtctggacagcaggtaactccaccgctgtcgactccggt 136  Q
    |||||||||  | |||||||||||||||| |||| | || ||||| ||||||||||| |||||||||||||| || ||||||| ||| || ||||||||     
T  15083846 cccaccaacaacccctccttccttcctcgccgccgtagtctactccggtggagctccagttgtctggacagctggaaactccatcgcagttgactccggg 15083945  T
Q  137 ggttccttccagtttc 152  Q
    || ||||| |||||||    
T  15083946 ggctcctttcagtttc 15083961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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