View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_high_22 (Length: 317)
Name: NF1420_high_22
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 55 - 298
Target Start/End: Original strand, 32482792 - 32483035
Alignment:
| Q |
55 |
gatgatatgcatgctgcacggccgttcttcccgcgagatctctacggtccaggagttggtttaggtgttggaccaagcagggtttcatcagatgatcatg |
154 |
Q |
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| T |
32482792 |
gatgatatgcatgctgcacggccgttcttcccgcgagatctctacggtccaggagttggtttaggtgttggaccaagcagggtttcatcagatgatcatg |
32482891 |
T |
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| Q |
155 |
aacatcaatcgtcgtcgagatcggcggcgtttactatggcgatgaggtcttcttcttcagctgaagggataagttgtcaagattgtggtaaccaagctaa |
254 |
Q |
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| T |
32482892 |
aacatcaatcgtcgtcgagatcggcggcgtttactatggcgatgaggtcttcttcttcagctgaagggataagttgtcaagattgtggtaaccaagctaa |
32482991 |
T |
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| Q |
255 |
gaaagattgtcctcacatgagatgtagaacttgttgtaagagtc |
298 |
Q |
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| T |
32482992 |
gaaagattgtcctcacatgagatgtagaacttgttgtaagagtc |
32483035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 8101876 - 8101950
Alignment:
| Q |
223 |
ataagttgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagt |
297 |
Q |
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| T |
8101876 |
ataagttgtcaagattgtgggaatcaagctaagaaagattgtcctcatatgagatgtagaacttgttgtaagagt |
8101950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 7418652 - 7418583
Alignment:
| Q |
229 |
tgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtc |
298 |
Q |
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| T |
7418652 |
tgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtc |
7418583 |
T |
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