View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_high_24 (Length: 309)
Name: NF1420_high_24
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_high_24 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 39723089 - 39723383
Alignment:
| Q |
15 |
acttgaatgttgtaaaattgtttgtaaatccatcatttcattttagtgatgttgaatttgtgttatttcttttatatattctaccaannnnnnngaataa |
114 |
Q |
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| T |
39723089 |
acttgaatgttgtaaaattgttcgtaaatccatcatttcattttagtgatgttgaatttatgttatttcttttatatattctacgaatttttttgaataa |
39723188 |
T |
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| Q |
115 |
atattattgttttagtagatatnnnnnnnnncaattaattcaaaggaaatttaaaaacttgaaagtgcttaaaagatactttttgtattcaacaataaag |
214 |
Q |
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| T |
39723189 |
atattattgttttagtagatataaaaaaaaacaattaattcaaaggaaatttaaaaacttaaaagtgcttaaaagatacgtattgtattcatcaataaag |
39723288 |
T |
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| Q |
215 |
gaggtcctcaaatcaggcaacaagattcaaaatcacttccttgtgtgaaatcacatgaactgaaacattgcgaaatgaaccaatcttcatcaatt |
309 |
Q |
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| T |
39723289 |
gaggtcctcaaatcaggcaacaagattcaaaatcactcccttgtgtgaaatcacatgaactgaaacattgtgaaatgaaccaatcttcatcaatt |
39723383 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 10552342 - 10552406
Alignment:
| Q |
32 |
ttgtttgtaaatccatcatttc--attttagtgatgttgaatttgtgttatttcttttatatatt |
94 |
Q |
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| T |
10552342 |
ttgtttgtagattcatcttttctaattttagcgacgttgaatttgtgttattttttttatatatt |
10552406 |
T |
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