View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1420_high_25 (Length: 299)

Name: NF1420_high_25
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1420_high_25
NF1420_high_25
[»] chr2 (23 HSPs)
chr2 (15-159)||(2743515-2743658)
chr2 (8-154)||(11951280-11951424)
chr2 (98-160)||(31314978-31315040)
chr2 (101-164)||(2743312-2743375)
chr2 (101-159)||(2743383-2743441)
chr2 (101-159)||(2743449-2743507)
chr2 (98-160)||(31346830-31346892)
chr2 (63-160)||(31347083-31347177)
chr2 (95-160)||(31315180-31315245)
chr2 (96-160)||(31315113-31315177)
chr2 (102-160)||(31315049-31315107)
chr2 (102-160)||(31346949-31347007)
chr2 (102-160)||(31347016-31347074)
chr2 (13-86)||(2743659-2743730)
chr2 (20-85)||(45682237-45682302)
chr2 (15-86)||(2743694-2743763)
chr2 (15-85)||(2743625-2743693)
chr2 (20-85)||(2743730-2743794)
chr2 (15-74)||(45682213-45682271)
chr2 (11-85)||(11951384-11951457)
chr2 (52-85)||(45682184-45682217)
chr2 (121-155)||(31346901-31346935)
chr2 (15-49)||(45682183-45682217)
[»] chr4 (37 HSPs)
chr4 (52-159)||(14190434-14190541)
chr4 (61-159)||(5909017-5909116)
chr4 (52-160)||(1505926-1506034)
chr4 (73-160)||(13713076-13713163)
chr4 (73-159)||(13702583-13702669)
chr4 (52-159)||(5599731-5599839)
chr4 (63-160)||(31663577-31663673)
chr4 (95-160)||(31663308-31663373)
chr4 (98-161)||(4852632-4852695)
chr4 (101-160)||(13713304-13713363)
chr4 (98-164)||(5599976-5600042)
chr4 (56-160)||(5578448-5578557)
chr4 (101-160)||(1506108-1506167)
chr4 (98-161)||(4852563-4852626)
chr4 (69-152)||(6735455-6735537)
chr4 (101-159)||(1506175-1506233)
chr4 (101-159)||(5599913-5599971)
chr4 (102-160)||(13713172-13713230)
chr4 (102-160)||(31663376-31663434)
chr4 (102-159)||(5599848-5599905)
chr4 (98-161)||(14190546-14190609)
chr4 (101-159)||(1506042-1506100)
chr4 (98-160)||(31663510-31663572)
chr4 (101-161)||(1506241-1506301)
chr4 (102-160)||(31663443-31663501)
chr4 (99-156)||(5578322-5578379)
chr4 (102-159)||(13713239-13713296)
chr4 (101-161)||(13713371-13713431)
chr4 (101-152)||(5578260-5578311)
chr4 (101-152)||(5909124-5909175)
chr4 (98-161)||(6735379-6735442)
chr4 (97-161)||(31663238-31663302)
chr4 (98-161)||(6735314-6735374)
chr4 (20-85)||(6736819-6736883)
chr4 (113-152)||(4852717-4852756)
chr4 (101-161)||(5578182-5578244)
chr4 (56-85)||(2464264-2464293)
[»] chr6 (41 HSPs)
chr6 (177-282)||(27703375-27703480)
chr6 (36-159)||(29934616-29934739)
chr6 (51-161)||(33296078-33296185)
chr6 (73-160)||(26620446-26620533)
chr6 (73-160)||(26726425-26726512)
chr6 (56-161)||(5250075-5250180)
chr6 (52-159)||(34255657-34255765)
chr6 (207-289)||(27682501-27682583)
chr6 (67-151)||(31113227-31113311)
chr6 (98-157)||(28145142-28145201)
chr6 (227-289)||(27715092-27715154)
chr6 (98-161)||(28145209-28145272)
chr6 (101-164)||(34255454-34255517)
chr6 (101-159)||(26726293-26726351)
chr6 (98-160)||(28145075-28145137)
chr6 (20-85)||(33296210-33296275)
chr6 (98-159)||(34255525-34255586)
chr6 (101-161)||(28145279-28145339)
chr6 (101-160)||(5250007-5250066)
chr6 (98-160)||(6406591-6406653)
chr6 (173-227)||(26059489-26059543)
chr6 (173-227)||(26079459-26079513)
chr6 (101-159)||(26620380-26620438)
chr6 (101-159)||(26726359-26726417)
chr6 (98-160)||(31113150-31113212)
chr6 (101-159)||(34255591-34255649)
chr6 (101-161)||(26620314-26620372)
chr6 (101-161)||(26726227-26726285)
chr6 (98-161)||(5249939-5250002)
chr6 (101-164)||(29934545-29934608)
chr6 (191-275)||(27078974-27079057)
chr6 (13-85)||(29934740-29934810)
chr6 (15-85)||(29934810-29934878)
chr6 (20-86)||(29934844-29934909)
chr6 (98-160)||(6406522-6406586)
chr6 (15-86)||(29934774-29934843)
chr6 (16-72)||(33296189-33296243)
chr6 (187-226)||(26852258-26852297)
chr6 (16-83)||(27313989-27314056)
chr6 (16-83)||(27575821-27575888)
chr6 (16-52)||(33296148-33296184)
[»] scaffold0046 (3 HSPs)
scaffold0046 (56-152)||(90432-90528)
scaffold0046 (98-158)||(90541-90601)
scaffold0046 (98-152)||(90610-90663)
[»] chr7 (41 HSPs)
chr7 (13-160)||(15695443-15695589)
chr7 (13-160)||(15702423-15702569)
chr7 (52-159)||(42785970-42786078)
chr7 (52-161)||(3078719-3078828)
chr7 (56-159)||(4341167-4341270)
chr7 (98-164)||(42785899-42785965)
chr7 (52-161)||(3081073-3081182)
chr7 (98-164)||(48478335-48478401)
chr7 (101-161)||(4341411-4341471)
chr7 (61-160)||(34456462-34456561)
chr7 (102-161)||(3078570-3078629)
chr7 (101-160)||(4341278-4341337)
chr7 (101-159)||(4341345-4341403)
chr7 (98-160)||(21958553-21958615)
chr7 (97-155)||(34456334-34456392)
chr7 (101-159)||(48477944-48478002)
chr7 (101-159)||(48478272-48478330)
chr7 (98-155)||(21958491-21958548)
chr7 (102-159)||(48478207-48478264)
chr7 (102-154)||(34456401-34456453)
chr7 (98-161)||(3081326-3081388)
chr7 (101-159)||(48478010-48478068)
chr7 (101-159)||(48478076-48478134)
chr7 (98-157)||(21958422-21958481)
chr7 (16-85)||(15687960-15688029)
chr7 (16-85)||(15695553-15695622)
chr7 (16-85)||(15702533-15702602)
chr7 (98-155)||(33615957-33616014)
chr7 (98-161)||(3078650-3078713)
chr7 (98-161)||(3081188-3081251)
chr7 (13-72)||(15687937-15687996)
chr7 (98-145)||(15695391-15695438)
chr7 (98-145)||(15702371-15702418)
chr7 (101-161)||(3078503-3078563)
chr7 (98-161)||(3081257-3081320)
chr7 (101-159)||(48478142-48478198)
chr7 (98-160)||(3081392-3081454)
chr7 (98-132)||(21958380-21958414)
chr7 (51-85)||(15687996-15688030)
chr7 (51-85)||(15695589-15695623)
chr7 (51-85)||(15702569-15702603)
[»] chr8 (33 HSPs)
chr8 (195-289)||(29270364-29270458)
chr8 (61-152)||(20810409-20810500)
chr8 (52-159)||(5557637-5557745)
chr8 (58-154)||(4844112-4844208)
chr8 (98-160)||(25336663-25336725)
chr8 (101-159)||(5557819-5557877)
chr8 (98-164)||(5558015-5558081)
chr8 (102-159)||(5557754-5557811)
chr8 (98-159)||(5557882-5557943)
chr8 (92-160)||(3166065-3166133)
chr8 (99-161)||(3165864-3165926)
chr8 (98-159)||(5557948-5558010)
chr8 (98-160)||(25336596-25336658)
chr8 (99-160)||(3165998-3166059)
chr8 (102-151)||(25336472-25336521)
chr8 (98-159)||(26082096-26082157)
chr8 (16-79)||(21541795-21541858)
chr8 (16-83)||(21541863-21541930)
chr8 (101-155)||(20810339-20810393)
chr8 (15-85)||(21541969-21542039)
chr8 (99-152)||(3165806-3165859)
chr8 (17-85)||(21541825-21541893)
chr8 (107-154)||(26082037-26082084)
chr8 (99-161)||(3165931-3165992)
chr8 (11-85)||(21541933-21542007)
chr8 (98-160)||(25336534-25336591)
chr8 (16-85)||(21541897-21541966)
chr8 (15-83)||(21542007-21542075)
chr8 (98-153)||(4844047-4844101)
chr8 (113-147)||(21542084-21542118)
chr8 (102-153)||(21542145-21542197)
chr8 (99-147)||(35859970-35860019)
chr8 (22-50)||(4844180-4844208)
[»] chr5 (11 HSPs)
chr5 (52-159)||(41528390-41528498)
chr5 (16-162)||(37368983-37369128)
chr5 (98-164)||(41528635-41528701)
chr5 (11-85)||(37369934-37370008)
chr5 (98-159)||(41528503-41528564)
chr5 (98-159)||(41528569-41528630)
chr5 (16-85)||(37369095-37369164)
chr5 (110-162)||(37368915-37368967)
chr5 (18-85)||(37369970-37370037)
chr5 (15-85)||(37369131-37369200)
chr5 (15-47)||(37369063-37369095)
[»] chr3 (36 HSPs)
chr3 (52-159)||(14521104-14521212)
chr3 (62-152)||(28034620-28034710)
chr3 (13-162)||(45227290-45227437)
chr3 (61-160)||(18111400-18111499)
chr3 (98-160)||(5835615-5835677)
chr3 (98-160)||(5938851-5938913)
chr3 (98-160)||(5938918-5938980)
chr3 (102-160)||(18111575-18111633)
chr3 (102-160)||(28034793-28034851)
chr3 (98-160)||(5938784-5938846)
chr3 (102-160)||(5938989-5939047)
chr3 (98-160)||(18111504-18111566)
chr3 (56-132)||(19383830-19383906)
chr3 (97-160)||(5938716-5938779)
chr3 (101-160)||(19384203-19384262)
chr3 (98-160)||(19441049-19441111)
chr3 (98-152)||(19441116-19441170)
chr3 (98-160)||(28034723-28034785)
chr3 (20-153)||(29896990-29897108)
chr3 (100-158)||(29897110-29897168)
chr3 (98-155)||(19479989-19480046)
chr3 (102-160)||(2746780-2746838)
chr3 (101-151)||(14521046-14521096)
chr3 (101-159)||(19384089-19384147)
chr3 (14-86)||(13468048-13468120)
chr3 (12-83)||(13468087-13468158)
chr3 (101-144)||(19384332-19384375)
chr3 (101-161)||(29897166-29897226)
chr3 (112-159)||(19384148-19384195)
chr3 (118-160)||(19384282-19384324)
chr3 (102-161)||(19480050-19480110)
chr3 (41-85)||(45227401-45227445)
chr3 (102-151)||(45227234-45227283)
chr3 (20-85)||(45227447-45227511)
chr3 (102-153)||(19480125-19480177)
chr3 (102-153)||(28034860-28034906)
[»] scaffold0927 (3 HSPs)
scaffold0927 (23-160)||(3482-3618)
scaffold0927 (98-152)||(3623-3677)
scaffold0927 (98-145)||(3690-3737)
[»] scaffold0043 (3 HSPs)
scaffold0043 (62-160)||(69830-69928)
scaffold0043 (98-161)||(69695-69758)
scaffold0043 (98-152)||(69771-69825)
[»] scaffold0349 (1 HSPs)
scaffold0349 (227-289)||(16790-16852)
[»] chr1 (23 HSPs)
chr1 (98-160)||(22207893-22207955)
chr1 (98-161)||(14114754-14114817)
chr1 (98-153)||(22208027-22208082)
chr1 (98-160)||(22207757-22207819)
chr1 (56-161)||(14114894-14115003)
chr1 (102-161)||(15088567-15088626)
chr1 (102-161)||(22207692-22207751)
chr1 (102-161)||(22207828-22207887)
chr1 (102-161)||(22211175-22211234)
chr1 (101-156)||(51844414-51844469)
chr1 (59-161)||(14114685-14114787)
chr1 (102-152)||(22208098-22208148)
chr1 (98-156)||(51844344-51844402)
chr1 (98-155)||(15088630-15088687)
chr1 (98-155)||(22211238-22211295)
chr1 (98-161)||(14114823-14114886)
chr1 (102-161)||(22207964-22208023)
chr1 (102-160)||(22207625-22207683)
chr1 (19-85)||(411807-411873)
chr1 (20-85)||(411773-411837)
chr1 (20-85)||(411844-411908)
chr1 (19-85)||(411878-411948)
chr1 (101-153)||(51844481-51844533)
[»] scaffold0060 (2 HSPs)
scaffold0060 (92-153)||(40001-40062)
scaffold0060 (102-152)||(39935-39985)
[»] scaffold0312 (4 HSPs)
scaffold0312 (19-85)||(18697-18763)
scaffold0312 (20-85)||(18662-18726)
scaffold0312 (20-85)||(18733-18797)
scaffold0312 (19-85)||(18622-18692)
[»] scaffold0158 (1 HSPs)
scaffold0158 (64-98)||(27809-27843)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 2743658 - 2743515
Alignment:
Q  15 gatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggtaactatttcatt-ttgttactatgagcc 113  Q
    ||||||||||||| ||| |||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2743658 gatataccacatt-tctcttcgttgtggtgaacggagatataccacatt-tctcttcgttgtggcgaacggtaactatttcattattgttactatgagcc 2743561  T
Q  114 gtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2743560 gtacctcataggctacattatctcttcgttgtagcaaacggagttt 2743515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 11951424 - 11951280
Alignment:
Q  8 gagcagagatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggtaactatttcattttgttacta 107  Q
    |||| |||||||| |||||| | | |||||||||||||||||  |||||||| ||||||||||||||||||| |||   |  | || ||||| |||||||    
T  11951424 gagcggagatatatcacatttttt-ttcgttgtggcgaacggagatataccatattatctcttcgttgtggcaaacataatttcttgcattt-gttacta 11951327  T
Q  108 tgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 154  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||    
T  11951326 tgagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 11951280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 31314978 - 31315040
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31314978 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 31315040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 2743375 - 2743312
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttttatc 164  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  2743375 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagattttatc 2743312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 2743441 - 2743383
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2743441 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 2743383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 2743507 - 2743449
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2743507 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 2743449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 31346892 - 31346830
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  31346892 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31346830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 31347177 - 31347083
Alignment:
Q  63 tatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||||  ||  | |||  | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31347177 tatctcttcgttgtggcgaacaatattttttt--tcttgttac-atgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 31347083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 31315180 - 31315245
Alignment:
Q  95 cattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31315180 catttttttactatgagccatacctcataggctacattatctcttcgttgtagcaaacggattttt 31315245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 31315113 - 31315177
Alignment:
Q  96 attttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  31315113 atttttttactatgagcagtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31315177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 31315049 - 31315107
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  31315049 ttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31315107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 31347007 - 31346949
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31347007 ttactatgagtcgtaccttataggctacattatctcttcgttgtagcaaacggagtttt 31346949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 31347074 - 31347016
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  31347074 ttactatgagccgtatctcatatgctacattatctcttcgttgtagcaaacggagtttt 31347016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 2743730 - 2743659
Alignment:
Q  13 gagatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggt 86  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  2743730 gagatataccacatt-tctcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtggcgaacggt 2743659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 45682302 - 45682237
Alignment:
Q  20 accacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  45682302 accacattatctcttcgttgtggcaaacggggatataccacattatctcttcgttgtggcgaacgg 45682237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 2743763 - 2743694
Alignment:
Q  15 gatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggt 86  Q
    ||||||||||||| ||| |||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  2743763 gatataccacatt-tctcttcgttgtggcgaacggagatataccacatt-tctcttcgttgtggcgaacggt 2743694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 2743693 - 2743625
Alignment:
Q  15 gatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||    
T  2743693 gatataccacatt-tctcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtggtgaacgg 2743625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 2743794 - 2743730
Alignment:
Q  20 accacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||| | ||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  2743794 accacaatttctcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtggcgaacgg 2743730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 45682271 - 45682213
Alignment:
Q  15 gatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgtt 74  Q
    ||||||||||||||||| |||||||||||||||||  ||||| |||||||||||| ||||    
T  45682271 gatataccacattatctcttcgttgtggcgaacggagatata-cacattatctctccgtt 45682213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 11951457 - 11951384
Alignment:
Q  11 cagagatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||||||||||| |||||| |||||| |||  ||||| |||||| | | |||||||||||||||||    
T  11951457 cagagatataccacattatctcttcgttatggcgagcggagatatatcacatt-ttttttcgttgtggcgaacgg 11951384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 45682184 - 45682217
Alignment:
Q  52 atataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||||||||||||||||||||||||    
T  45682184 atataccacattatctcttcgttgtggcgaacgg 45682217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 31346935 - 31346901
Alignment:
Q  121 ataggctacattatctcttcgttgtagcaaacgga 155  Q
    ||||||||||||||||||||||||||| |||||||    
T  31346935 ataggctacattatctcttcgttgtagaaaacgga 31346901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 45682183 - 45682217
Alignment:
Q  15 gatataccacattatctattcgttgtggcgaacgg 49  Q
    ||||||||||||||||| |||||||||||||||||    
T  45682183 gatataccacattatctcttcgttgtggcgaacgg 45682217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 14190434 - 14190541
Alignment:
Q  52 atataccacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 151  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14190434 atataccacattatcccttcgttgtggcaaacggtaattatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 14190533  T
Q  152 cggagttt 159  Q
    ||||||||    
T  14190534 cggagttt 14190541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 5909017 - 5909116
Alignment:
Q  61 attatctcttcgttgtggcgaacggtaactatttcatt-ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5909017 attatctcttcgttatggcgaacggtaactatttcattattgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 5909116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 1505926 - 1506034
Alignment:
Q  52 atataccacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 151  Q
    ||||| ||||||  || ||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1505926 atatatcacattgcctattcattgtagcgaacggtaactatttcattttgttactatgagccgtacttcataggctacattatctcttcgttgtagcaaa 1506025  T
Q  152 cggagtttt 160  Q
    |||||||||    
T  1506026 cggagtttt 1506034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 13713076 - 13713163
Alignment:
Q  73 ttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  13713076 ttgtggcgaacggtaactatttcattttgttactatgagtcctacctcataggctacattatctcttcgttgtagcaaacggagtttt 13713163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 13702583 - 13702669
Alignment:
Q  73 ttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  13702583 ttgtggcgaacggtaactatttcattttgttactatgagtcctacctcataggctacattatctcttcgttgtagcaaacggagttt 13702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 5599731 - 5599839
Alignment:
Q  52 atataccacattatctcttcgttgtggcgaacggtaactatttcatt-ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaa 150  Q
    ||||| || |||||||||||||| || |||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5599731 atatatcatattatctcttcgttatgtcgaacggtaactatttcattatttttactatgagtcgtacctcataggctacattatctcttcgttgtagcaa 5599830  T
Q  151 acggagttt 159  Q
    |||||||||    
T  5599831 acggagttt 5599839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 31663673 - 31663577
Alignment:
Q  63 tatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||||  ||||| |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  31663673 tatctcttcgttgtggcgaacaataactttttt-ttttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31663577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 31663373 - 31663308
Alignment:
Q  95 cattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31663373 catttttttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 31663308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 4852632 - 4852695
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4852632 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacagagttttt 4852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 13713304 - 13713363
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13713304 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 13713363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 5599976 - 5600042
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttttatc 164  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  5599976 tttgttactatgagccgttcatcataggctacattatctcttcgttgtagcaaacggagtttttatc 5600042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 5578557 - 5578448
Alignment:
Q  56 accacattatctcttcgttgtggcgaacgg-----taactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaa 150  Q
    ||||||||||||||||||||||||||||||     |  || | |||  ||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  5578557 accacattatctcttcgttgtggcgaacggagttttttctctctcaaattgttactatgagtcgtacctcgtaggctacattatctcttcgttgtagcaa 5578458  T
Q  151 acggagtttt 160  Q
    ||||||||||    
T  5578457 acggagtttt 5578448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 1506108 - 1506167
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1506108 gttactatgagccgtacctcataggctatattatctcttcgttgtagcaaacggagtttt 1506167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 4852563 - 4852626
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4852563 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagttttt 4852626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 6735537 - 6735455
Alignment:
Q  69 ttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||  ||||||||||||||||| ||||    
T  6735537 ttcgttgtggcgaacggtaactatttcattttgttactatgagtcgtacttcataggtta-gttatctcttcgttgtagtaaac 6735455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 1506175 - 1506233
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1506175 gttactatgagccatacctcataggctacattatctcttcgttgtagcaaacggagttt 1506233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 5599913 - 5599971
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5599913 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5599971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 13713172 - 13713230
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13713172 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 13713230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 31663434 - 31663376
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31663434 ttactatgagccgtatctcataggctacattatctcttcgttgtagcaaacggagtttt 31663376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 5599848 - 5599905
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5599848 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5599905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 14190546 - 14190609
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||    
T  14190546 tttgttactatgagccgtacctcgtaggctacattatctcttcgttgtagcaaacagagatttt 14190609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 1506042 - 1506100
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  1506042 gttactatgagccttacctcataggctacattatctcttcgttgtagcaaactgagttt 1506100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 31663572 - 31663510
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  31663572 tttgttactttgagccgtaccttataggctacattatctcttcattgtagcaaacggagtttt 31663510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 1506241 - 1506301
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  1506241 gttactatgagccgtacctcataggctacattatctcttcgttgttgcaaacatagttttt 1506301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 31663501 - 31663443
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  31663501 ttactatgagctacacctcataggctacattatctcttcgttgtagcaaacggagtttt 31663443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 5578379 - 5578322
Alignment:
Q  99 ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggag 156  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  5578379 ttgttactatgagccatacctcattggctacattatctcttcgttgtagcaaaaggag 5578322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 13713239 - 13713296
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  13713239 ttactatgagtcgtacctcataggctacattatctcttcgtcgtagcaaacagagttt 13713296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 13713371 - 13713431
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||    
T  13713371 gttattatgagtcatacctcataggatacattatctcttcgttgtagcaaacggagttttt 13713431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 5578311 - 5578260
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  5578311 gttactataagtcgtacctcataggctacattatctcttcgttgtagcaaac 5578260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 5909124 - 5909175
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  5909124 gttactatgagtcgttcctcataggctacattatctcttcgttgtagcaaac 5909175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 6735442 - 6735379
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||||||||||| ||| ||||    
T  6735442 tttgttactatgagtcgtatctcataagctacattatctcttcgttgtagcaaacagagatttt 6735379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 31663302 - 31663238
Alignment:
Q  97 ttttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  31663302 tttttttactatgagttgtacctcataggctacattatctattcattgtagcaaacggatttttt 31663238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 6735374 - 6735314
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||| ||||||||||| ||||||||||||||||   ||||||||| ||||||||    
T  6735374 tttgttactatgagtcgtacctcataagctacattatctcttc---gtagcaaacagagttttt 6735314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 6736819 - 6736883
Alignment:
Q  20 accacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||| ||||||| ||||||||||||||||| |||||| |||||| |||||| ||||||||||||||    
T  6736819 accatattatctcttcgttgtggcgaacggaaatatagcacatt-tctctttgttgtggcgaacgg 6736883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 4852717 - 4852756
Alignment:
Q  113 cgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  4852717 cgtacctcataggctacattatctcttcggtgtagcaaac 4852756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 5578244 - 5578182
Alignment:
Q  101 gttactatgagccgtacctcataggctacat--tatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||||| |||||||||| ||||||  |||||||||||||||| |||||||| ||||    
T  5578244 gttactatgagccatacctcatagactacattatatctcttcgttgtagtaaacggagatttt 5578182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Complemental strand, 2464293 - 2464264
Alignment:
Q  56 accacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||||||||||||||||||||    
T  2464293 accacattatctcttcgttgtggcgaacgg 2464264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 27703375 - 27703480
Alignment:
Q  177 cgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||    
T  27703375 cgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttttttgttcctctttctttaaatcctgttgttgcaatgaagcattgatatcc 27703474  T
Q  277 tcctct 282  Q
    ||||||    
T  27703475 tcctct 27703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 36 - 159
Target Start/End: Complemental strand, 29934739 - 29934616
Alignment:
Q  36 gttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggtaactatttcatt-ttgttactatgagccgtacctcataggctacattat 134  Q
    ||||||| ||||||  |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29934739 gttgtggtgaacggagatataccacatt-tctcttcgttgtggcgaacagtaactatttcattattgttactatgagccgtacctcataggctacattat 29934641  T
Q  135 ctcttcgttgtagcaaacggagttt 159  Q
    |||||||||||||||||||||||||    
T  29934640 ctcttcgttgtagcaaacggagttt 29934616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 33296185 - 33296078
Alignment:
Q  51 aatataccacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaa 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||    
T  33296185 aatataccacattatctcttcgttgtggcgaacggtaactatttcattttgttactat---ccgtatctcataggctacattatctcttcgttgtagcaa 33296089  T
Q  151 acggagttttt 161  Q
    || || |||||    
T  33296088 actgatttttt 33296078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 26620533 - 26620446
Alignment:
Q  73 ttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26620533 ttgtggcgaatggtaactatttcattttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 26620446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 26726512 - 26726425
Alignment:
Q  73 ttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26726512 ttgtggcgaatggtaactatttcattttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 26726425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 5250180 - 5250075
Alignment:
Q  56 accacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 155  Q
    |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| |||||||||||||||| |||    
T  5250180 accatattatctcttcgttgtggtgaacggtaactatttcatttttttactatgagttgtacctcataggctacattatttcttcgttgtagcaaatgga 5250081  T
Q  156 gttttt 161  Q
    ||||||    
T  5250080 gttttt 5250075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 34255765 - 34255657
Alignment:
Q  52 atataccacattatctcttcgttgtggcgaacggtaactatttcatt-ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaa 150  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  34255765 atatatcatattatctcttcgttatggcgaacggtaactatttcattatttttactatgagtcgttcctcataggctacattatctcttcgttgtagcaa 34255666  T
Q  151 acggagttt 159  Q
    |||||||||    
T  34255665 acggagttt 34255657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 27682583 - 27682501
Alignment:
Q  207 gaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 289  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  27682583 gaatgtaccccatgtctttctttgttcctctttcatcaattcctgttgttgcaatgaagcattgatatcctcctctgtctctg 27682501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 31113311 - 31113227
Alignment:
Q  67 tcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 151  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||    
T  31113311 tcttcgttgtggcgaacggtaactattttattttgttaatatgagtcatacctcataagctacattatctcttcgttgtagcaaa 31113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 28145142 - 28145201
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagt 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28145142 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagt 28145201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 27715092 - 27715154
Alignment:
Q  227 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 289  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27715092 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctg 27715154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 28145209 - 28145272
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  28145209 tttgttactatgagccgtacatcataggctacattatctcttcgttgtagcaaacggagatttt 28145272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 34255517 - 34255454
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttttatc 164  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  34255517 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagattttatc 34255454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 26726351 - 26726293
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26726351 gttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggagttt 26726293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 28145075 - 28145137
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  28145075 tttgttactatgagctgtacctcataggctacattatctctttgttgtagcaaacggagtttt 28145137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 33296275 - 33296210
Alignment:
Q  20 accacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  33296275 accacattatctcttcgttgtggcgaacggaaatataccacattatttcttcgttgtggcgaacgg 33296210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 34255586 - 34255525
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34255586 tttgttactttgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 34255525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 28145279 - 28145339
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  28145279 gttactatgagccgtacctcatagactacattatctcttcgttgtagcaaacggagatttt 28145339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 5250066 - 5250007
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  5250066 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagtttt 5250007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 6406591 - 6406653
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  6406591 tttgttattatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 6406653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 26059543 - 26059489
Alignment:
Q  173 catccgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttct 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26059543 catccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26059489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 26079513 - 26079459
Alignment:
Q  173 catccgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttct 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26079513 catccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26079459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 26620438 - 26620380
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26620438 gttactataagccgtacctcataggctacattatctcttcgttgtagcaaacgaagttt 26620380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 26726417 - 26726359
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26726417 gttactataagccgtacctcataggctacattatctcttcgttgtagcaaacgaagttt 26726359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 31113212 - 31113150
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  31113212 tttgttactatgagctatacctcataggctacattatctcttcgttgtagcaaacagagtttt 31113150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 34255649 - 34255591
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  34255649 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacagagttt 34255591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 26620372 - 26620314
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  26620372 gttactatgagccgtacctca--ggctacattatctcttcgttgtagcaaacggagttttt 26620314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 26726285 - 26726227
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  26726285 gttactatgagccgtacctca--ggctacattatctcttcgttgtagcaaacggagttttt 26726227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 5250002 - 5249939
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| || |||||    
T  5250002 tttgttactatgagccgtacctcatacactacattatctcttcgttgtagcaaacagaattttt 5249939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 29934608 - 29934545
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttttatc 164  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  29934608 gttactatgagcggttcctcataggctacattatctcttcgttgtagcaaatggagattttatc 29934545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 27079057 - 27078974
Alignment:
Q  191 atgcacctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatc 275  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||  |||| |||| ||||||||| ||||| ||||||||    
T  27079057 atgcacctagacaaaggaatgtaccccatgtctttctttcttccacttttatcaattccttttgttgcaacgaagc-ttgatatc 27078974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 29934810 - 29934740
Alignment:
Q  13 gagatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||    
T  29934810 gagatataccacatt-tctcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtggtgaacgg 29934740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 29934878 - 29934810
Alignment:
Q  15 gatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||| ||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||||    
T  29934878 gatataccacatt-tctcttcgttgtggcgaacggtgatacaccacatt-tctcttcgttgtggcgaacgg 29934810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 29934909 - 29934844
Alignment:
Q  20 accacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggt 86  Q
    |||||| | ||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  29934909 accacaatttctcttcgttgtggcgaacggtgatataccacatt-tctcttcgttgtggcgaacggt 29934844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 6406522 - 6406586
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttg--tagcaaacggagtttt 160  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||  ||||||||||| ||||    
T  6406522 tttgttactatgagccgtacctcataggctacattatttcttcattgtatagcaaacggattttt 6406586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 29934843 - 29934774
Alignment:
Q  15 gatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggt 86  Q
    |||| |||||||| ||| |||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  29934843 gatacaccacatt-tctcttcgttgtggcgaacggagatataccacatt-tctcttcgttgtggcgaacggt 29934774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 33296243 - 33296189
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcg 72  Q
    |||||||||||||| | |||||||||||||||||  |||||||||||||||||||||    
T  33296243 atataccacattatttcttcgttgtggcgaacgg--atataccacattatctcttcg 33296189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 26852297 - 26852258
Alignment:
Q  187 tttgatgcacctagactaaggaatgtaccccatgtctttc 226  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  26852297 tttgatgcacctagactaaggaatgtaccccaagtctttc 26852258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 27313989 - 27314056
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaac 83  Q
    |||||| ||||| ||| |||||||| | ||||||  ||| ||||||||||||||||||||||||||||    
T  27313989 atatactacattgtcttttcgttgtagtgaacggagatagaccacattatctcttcgttgtggcgaac 27314056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 27575821 - 27575888
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaac 83  Q
    |||||||||||| ||| || ||||||| ||||||  ||| |||||||| |||||||||||||||||||    
T  27575821 atataccacattgtctctttgttgtggtgaacggagatagaccacattttctcttcgttgtggcgaac 27575888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 33296184 - 33296148
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaa 52  Q
    |||||||||||||||| ||||||||||||||||||||    
T  33296184 atataccacattatctcttcgttgtggcgaacggtaa 33296148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 90432 - 90528
Alignment:
Q  56 accacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  90432 accacattatctcttcgttgtggcgaacgataactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 90528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 90541 - 90601
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtt 158  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||    
T  90541 tttgttactatgagccgtacctcataggcaaaattatctcttcgttgtagcaaacagagtt 90601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 90610 - 90663
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  90610 tttgttactatgagccgtac-tcataggctacattatctattcgttgtagcaaac 90663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 15695589 - 15695443
Alignment:
Q  13 gagatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagc 112  Q
    |||||||||||||||||||  ||||||||| |||||| ||||||||||||||||||||||||||||||||||||  || |||   ||||||||||| |||    
T  15695589 gagatataccacattatctcatcgttgtggtgaacggaaatataccacattatctcttcgttgtggcgaacggt-tctttttgcatttgttactataagc 15695491  T
Q  113 cgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||    
T  15695490 cttacctcataggctacattatctcttagttgtagcaaacggagtttt 15695443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 15702569 - 15702423
Alignment:
Q  13 gagatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagc 112  Q
    |||||||||||||||||||  ||||||||| |||||| ||||||||||||||||||||||||||||||||||||  || |||   ||||||||||| |||    
T  15702569 gagatataccacattatctcatcgttgtggtgaacggaaatataccacattatctcttcgttgtggcgaacggt-tctttttgcatttgttactataagc 15702471  T
Q  113 cgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||    
T  15702470 cttacctcataggctacattatctcttagttgtagcaaacggagtttt 15702423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 42786078 - 42785970
Alignment:
Q  52 atataccacattatctcttcgttgtggcgaacggtaactatttcatt-ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaa 150  Q
    ||||| || ||||| |||||||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42786078 atatatcatattatttcttcgttatggtgaacggtaactatttcattattgttactatcagccgtacctcataggctacattatctcttcgttgtagcaa 42785979  T
Q  151 acggagttt 159  Q
    |||||||||    
T  42785978 acggagttt 42785970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 3078828 - 3078719
Alignment:
Q  52 atataccacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 151  Q
    |||||||||||||||| |||||| |||||||  ||||||||||  ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  3078828 atataccacattatcttttcgttatggcgaatagtaactattttgttttgatactatgagccgtacctcataagctacgttatctcttcgttgtagcaaa 3078729  T
Q  152 cggagttttt 161  Q
    |  |||||||    
T  3078728 caaagttttt 3078719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 4341167 - 4341270
Alignment:
Q  56 accacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 155  Q
    |||||||| ||||||||||||||| || ||    | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4341167 accacattgtctcttcgttgtggcaaatggagtttttctcaatttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 4341266  T
Q  156 gttt 159  Q
    ||||    
T  4341267 gttt 4341270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 42785965 - 42785899
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttttatc 164  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42785965 tttgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 42785899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 3081073 - 3081182
Alignment:
Q  52 atataccacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 151  Q
    |||||||||| |||||  ||||| |||||||  |||||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  3081073 atataccacaatatcttctcgttatggcgaatagtaactattttattttgatactatgagtcgtacctcataggctacgttatctcttcgttgtagcaaa 3081172  T
Q  152 cggagttttt 161  Q
      ||||||||    
T  3081173 tagagttttt 3081182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 48478335 - 48478401
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttttatc 164  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  48478335 tttgttactatgagccgttcatcataggctacattatctcttcgttgtagcaaacggagtttttatc 48478401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 4341411 - 4341471
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4341411 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagatttt 4341471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 34456561 - 34456462
Alignment:
Q  61 attatctcttcgttgtggcgaacggtaactatttcat-tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||| |||||||| |||| |||||||  |||||  |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  34456561 attatcttttcgttgtagcga-cggtaacattttcacatttgttactatgagccgtacttcatagactacattatctcttcgttgtagcaaacggagttt 34456463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 3078629 - 3078570
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3078629 ttactatgagccgtacctcataggctacattatctattcgttgtagcaaacggagttttt 3078570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 4341278 - 4341337
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4341278 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 4341337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 4341345 - 4341403
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4341345 gttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggagttt 4341403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 21958615 - 21958553
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  21958615 tttgttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacggagtttt 21958553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 34456392 - 34456334
Alignment:
Q  97 ttttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 155  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34456392 tttttttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 34456334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 48477944 - 48478002
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48477944 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 48478272 - 48478330
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48478272 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 21958548 - 21958491
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 155  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21958548 tttgttactatgagccatacctcataggctacattatctcttcgttgtagcaaacgga 21958491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 48478207 - 48478264
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48478207 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 34456453 - 34456401
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34456453 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 34456401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 3081326 - 3081388
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3081326 tttgttactatgagtcgtacctcataggctacattatct-ttcgttgtagcaaacggagttttt 3081388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 48478010 - 48478068
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  48478010 gttactatgacccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 48478076 - 48478134
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  48478076 gttactatgacccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 21958481 - 21958422
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagt 157  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  21958481 tttgttactatgagccgtacctcataggttacattatctctttgttttagcaaacggagt 21958422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 15688029 - 15687960
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||||||| |||||||||| ||||||  ||||||||||||||||| ||||||||| ||||||    
T  15688029 atataccacattatctcttcgttgtggtgaacggagatataccacattatctcatcgttgtggtgaacgg 15687960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 15695622 - 15695553
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||||||| |||||||||| ||||||  ||||||||||||||||| ||||||||| ||||||    
T  15695622 atataccacattatctcttcgttgtggtgaacggagatataccacattatctcatcgttgtggtgaacgg 15695553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 15702602 - 15702533
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||||||| |||||||||| ||||||  ||||||||||||||||| ||||||||| ||||||    
T  15702602 atataccacattatctcttcgttgtggtgaacggagatataccacattatctcatcgttgtggtgaacgg 15702533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 33616014 - 33615957
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 155  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  33616014 tttgttaccatgagccgtacctcatagactacattgtctcttcgttgtagcaaacgga 33615957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 3078713 - 3078650
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||| | || ||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  3078713 tttgttactgtaagtcgtacctcataggctacattatctcatcgttgtagcaaacagagttttt 3078650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 3081188 - 3081251
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||  |||||||    
T  3081188 tttgttactatgagtcgtacctcataggctgcattatctcatcgttgtagcaaacaaagttttt 3081251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 15687996 - 15687937
Alignment:
Q  13 gagatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcg 72  Q
    |||||||||||||||||||  ||||||||| |||||| ||||||||||||||||||||||    
T  15687996 gagatataccacattatctcatcgttgtggtgaacggaaatataccacattatctcttcg 15687937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 15695438 - 15695391
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgt 145  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15695438 tttgttactatgagctgtacctcataggctacattatctcttcgttgt 15695391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 15702418 - 15702371
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgt 145  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15702418 tttgttactatgagctgtacctcataggctacattatctcttcgttgt 15702371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 3078563 - 3078503
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||| |||||  |||||||    
T  3078563 gttactatgagtcgtacctcatagactacattatctcttcgttgtaacaaacaaagttttt 3078503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 3081257 - 3081320
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||| |||||| |||||||| ||||||||| || ||||||||||| ||||||||    
T  3081257 tttgttactatgagtcgtaccccataggctgcattatctcatcattgtagcaaacagagttttt 3081320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 48478142 - 48478198
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||| |||| ||||||||||||||||  ||||||||||||||||||||    
T  48478142 gttactatgagccgttcctcgtaggctacattatctc--cgttgtagcaaacggagttt 48478198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 3081392 - 3081454
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||| |||||||||| ||||||||||||||| ||||| |||||| | ||||||    
T  3081392 tttgttactatgagtcgtacctcattggctacattatctctccgttgcagcaaatgaagtttt 3081454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 21958414 - 21958380
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacatt 132  Q
    |||||||||||||||||||||||||||||||||||    
T  21958414 tttgttactatgagccgtacctcataggctacatt 21958380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 15688030 - 15687996
Alignment:
Q  51 aatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||||||||||||||||||| ||||||    
T  15688030 aatataccacattatctcttcgttgtggtgaacgg 15687996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 15695623 - 15695589
Alignment:
Q  51 aatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||||||||||||||||||| ||||||    
T  15695623 aatataccacattatctcttcgttgtggtgaacgg 15695589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 15702603 - 15702569
Alignment:
Q  51 aatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||||||||||||||||||| ||||||    
T  15702603 aatataccacattatctcttcgttgtggtgaacgg 15702569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 195 - 289
Target Start/End: Original strand, 29270364 - 29270458
Alignment:
Q  195 acctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 289  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270364 acctagactaaggtatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 29270458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 20810500 - 20810409
Alignment:
Q  61 attatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20810500 attatctcttcgttgtggtgaacggtaactatttcatttggttactatgacccgtacctcataggctacattatctcttcgttgtagcaaac 20810409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 5557637 - 5557745
Alignment:
Q  52 atataccacattatctcttcgttgtggcgaacggtaactatttcatt-ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaa 150  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  5557637 atatatcatattatctcttcgttatggcgaacggtaactatttcattatttttactatgagctgtaccttataggctacattatctcttcgttgtagcaa 5557736  T
Q  151 acggagttt 159  Q
    |||||||||    
T  5557737 acggagttt 5557745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 4844208 - 4844112
Alignment:
Q  58 cacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 154  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||  |||||||||  |||||||||||||    
T  4844208 cacattatctattcgttgtggcgaacggtgactatttcattttgttactatgagccgtaccttgtaggctatgttatctcttttttgtagcaaacgg 4844112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 25336663 - 25336725
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25336663 tttgttactatgagccgtacctcataggctacattatcttttcgttgtagcaaacggagtttt 25336725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 5557819 - 5557877
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5557819 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5557877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 5558015 - 5558081
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttttatc 164  Q
    |||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  5558015 tttgttactatgagtcgttcctcatcggctacattatctcttcgttgtagcaaacggagtttttatc 5558081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 5557754 - 5557811
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5557754 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5557811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 5557882 - 5557943
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  5557882 tttgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacagagttt 5557943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 3166133 - 3166065
Alignment:
Q  92 tttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  3166133 tttccttttgttactatgagccgtaccttataggctacattatctcttcgttgtagcaagcggtgtttt 3166065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 3165926 - 3165864
Alignment:
Q  99 ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  3165926 ttgttactatgagacgtacctcataagctacattatctcttcgttgtagcaaacagagttttt 3165864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 5557948 - 5558010
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctc-ttcgttgtagcaaacggagttt 159  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  5557948 tttgttactatgagccgttcctcataggctacattatctctttcgttgtagcaaacggagttt 5558010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 25336596 - 25336658
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||    
T  25336596 tttgttactatgagttgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 25336658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 3166059 - 3165998
Alignment:
Q  99 ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  3166059 ttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaatggaatttt 3165998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 25336472 - 25336521
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25336472 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 25336521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 26082096 - 26082157
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  26082096 tttgttaatatgagtcgtacctcataggctacattatctctccgttgtagcaaacggagttt 26082157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 21541858 - 21541795
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggc 79  Q
    |||||||||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||||    
T  21541858 atataccacattatcttttcgttgtggtgaacggatatataccacattatctcttcgttgtggc 21541795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 21541930 - 21541863
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaac 83  Q
    |||||||| ||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  21541930 atataccatattatctcttcgttgtggcgaacggaggtataccacattatctcttcgttgtggcgaac 21541863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 20810393 - 20810339
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 155  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  20810393 gttactatgaaccatacctcataggctacattatctcttcgttgtagcaaacgga 20810339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 21542039 - 21541969
Alignment:
Q  15 gatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||||||| ||||||||||||||| |   |||||||||||||| ||||||||||||||||||    
T  21542039 gatataccacattatctcttcgttgtggcgaacagaggtataccacattatcccttcgttgtggcgaacgg 21541969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 3165859 - 3165806
Alignment:
Q  99 ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  3165859 ttgttactatgagacgtacctcataagctacattatctcttcgttgtagcaaac 3165806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 21541893 - 21541825
Alignment:
Q  17 tataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||||| |||||||||||||||   ||||||||||||||||| |||||||||| ||||||    
T  21541893 tataccacattatctcttcgttgtggcgaacataaatataccacattatcttttcgttgtggtgaacgg 21541825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 26082037 - 26082084
Alignment:
Q  107 atgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 154  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26082037 atgagccgtacctcataggctacattatcacttcgttgtagcaaacgg 26082084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 3165992 - 3165931
Alignment:
Q  99 ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||    
T  3165992 ttgttactatgagtcgtacctcataggctgcattatctcttcg-tgtagcaaacagagttttt 3165931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 21542007 - 21541933
Alignment:
Q  11 cagagatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||| ||||||||||||||  ||||||||||||||||| |||||| |||||||||| || ||||||| ||||||    
T  21542007 cagaggtataccacattatcccttcgttgtggcgaacggaaatatatcacattatctttttgttgtggtgaacgg 21541933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 25336534 - 25336591
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||    
T  25336534 tttgttactatgagccgta-----taggctacattatctcttcgttgtagcaaacggagtttt 25336591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 21541966 - 21541897
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||| |||||||||| || ||||||| ||||||  |||||||| |||||||||||||||||||||||||    
T  21541966 atatatcacattatctttttgttgtggtgaacggatatataccatattatctcttcgttgtggcgaacgg 21541897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 21542075 - 21542007
Alignment:
Q  15 gatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaac 83  Q
    ||||| |||| |||||| ||| ||||||||||||   ||||||||||||||||||||||||||||||||    
T  21542075 gatatgccacgttatctcttcattgtggcgaacgaggatataccacattatctcttcgttgtggcgaac 21542007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 4844101 - 4844047
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacg 153  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  4844101 tttgttattatgagc-gtacctcataggctacattatctattcgttgtaacaaacg 4844047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 21542118 - 21542084
Alignment:
Q  113 cgtacctcataggctacattatctcttcgttgtag 147  Q
    |||||||||||||||||||||||||||||||||||    
T  21542118 cgtacctcataggctacattatctcttcgttgtag 21542084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 21542197 - 21542145
Alignment:
Q  102 ttactatgagcc-gtacctcataggctacattatctcttcgttgtagcaaacg 153  Q
    |||||||||||  |||||||||| ||||||||||||||| |||||||||||||    
T  21542197 ttactatgagcatgtacctcataagctacattatctctttgttgtagcaaacg 21542145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 35859970 - 35860019
Alignment:
Q  99 ttgttactatgagc-cgtacctcataggctacattatctcttcgttgtag 147  Q
    |||||||||||||| | || |||||| |||||||||||||||||||||||    
T  35859970 ttgttactatgagcacataactcatatgctacattatctcttcgttgtag 35860019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 4844208 - 4844180
Alignment:
Q  22 cacattatctattcgttgtggcgaacggt 50  Q
    |||||||||||||||||||||||||||||    
T  4844208 cacattatctattcgttgtggcgaacggt 4844180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 41528390 - 41528498
Alignment:
Q  52 atataccacattatctcttcgttgtggcgaacggtaactatttcatt-ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaa 150  Q
    ||||| || |||||||||||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528390 atatatcatattatctcttcgttatgacgaacggtaactatttcattatttttactatgagccgtacctcataggctacattatctcttcgttgtagcaa 41528489  T
Q  151 acggagttt 159  Q
    |||||||||    
T  41528490 acggagttt 41528498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 37369128 - 37368983
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggtaactatt--tcattttgttactatgagcc 113  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||| | |  ||||  ||| || ||||||||||| |    
T  37369128 atataccacattatctcttcgttgtggcgaacgg--atataccacattatctcttcgttgtggcgaacag-agttatttctcaattcgttactatgagtc 37369032  T
Q  114 gtacctcataggctacattatctcttcgttgtagcaaacggagttttta 162  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  37369031 gtacctcataggctacattatctctttgttgtagtaaacggatttttta 37368983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 41528635 - 41528701
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttttatc 164  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528635 tttgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 41528701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 37370008 - 37369934
Alignment:
Q  11 cagagatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  37370008 cagagatataccacattatctcttcgttgtggcgaacggaaatatgtcacattatctcttcgttgtggcgaacgg 37369934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 41528503 - 41528564
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41528503 tttgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 41528564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 41528569 - 41528630
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41528569 tttgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 41528630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 37369164 - 37369095
Alignment:
Q  16 atataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37369164 atataccaaattatctctttgttgtggcgaacggaaatataccacattatctcttcgttgtggcgaacgg 37369095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 37368967 - 37368915
Alignment:
Q  110 agccgtacctcataggctacattatctcttcgttgtagcaaacggagttttta 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37368967 agccgtacctcataggctacattatctcttcgttgtagcaaacggatttttta 37368915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 37370037 - 37369970
Alignment:
Q  18 ataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||||  ||||||||||| ||| |  ||||||||||||||||||||||||||||||||||    
T  37370037 ataccacattatcccttcgttgtggcaaacagagatataccacattatctcttcgttgtggcgaacgg 37369970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 37369200 - 37369131
Alignment:
Q  15 gatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||| || |||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  37369200 gatatgccccattatctcttcgttgtggcgaacgg-aatataccaaattatctctttgttgtggcgaacgg 37369131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 37369095 - 37369063
Alignment:
Q  15 gatataccacattatctattcgttgtggcgaac 47  Q
    ||||||||||||||||| |||||||||||||||    
T  37369095 gatataccacattatctcttcgttgtggcgaac 37369063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 14521212 - 14521104
Alignment:
Q  52 atataccacattatctcttcgttgtggcgaacggtaactatttcatt-ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaa 150  Q
    ||||| || ||||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14521212 atatatcatattatctcttcattatagcgaacggtaactatttcattattgttactatgagccgtacctcatacgctacattatctcttcgttgtagcaa 14521113  T
Q  151 acggagttt 159  Q
    |||||||||    
T  14521112 acggagttt 14521104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 28034620 - 28034710
Alignment:
Q  62 ttatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    ||||||||||||||||| ||||  |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28034620 ttatctcttcgttgtggtgaacaataactatttcatttcgttactatgagccgtacctcataggctacattatttcttcgttgtagcaaac 28034710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 45227437 - 45227290
Alignment:
Q  13 gagatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagc 112  Q
    ||||||||||||||||||| |||||||||||||||||  |||||||||||| | |||||||||||||||| | ||  |  |  |||||  ||||||||||    
T  45227437 gagatataccacattatctcttcgttgtggcgaacggagatataccacatt-tatcttcgttgtggcgaaagatattttctctatttt--tactatgagc 45227341  T
Q  113 -cgtacctcataggctacattatctcttcgttgtagcaaacggagttttta 162  Q
     |||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  45227340 acgtaccacataggctacattatctcttcgttgtagcaaacagagttttta 45227290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 18111400 - 18111499
Alignment:
Q  61 attatctcttcgttgtggcgaacggtaactatttcat-tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||| |||||||| |||| |||||||  |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18111400 attatcttttcgttgtagcga-cggtaacattttcacatttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggggttt 18111498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 5835615 - 5835677
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5835615 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 5835677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 5938851 - 5938913
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5938851 tttgttactatgagccgtacctcataggctacatcatctcttcgttgtagcaaacggagtttt 5938913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 5938918 - 5938980
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5938918 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggaatttt 5938980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 18111575 - 18111633
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18111575 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 18111633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 28034793 - 28034851
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28034793 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 28034851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 5938784 - 5938846
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  5938784 tttgttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacggagtttt 5938846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 5938989 - 5939047
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5938989 ttactatgagccgtacctcatagactacattatctcttcgttgtagcaaacggagtttt 5939047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 18111504 - 18111566
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18111504 tttgttattatgagcggtacctcataggctacattatctcttcgttgtagcaaacggagtttt 18111566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 19383906 - 19383830
Alignment:
Q  56 accacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacatt 132  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||  |||||||| ||||||||||    
T  19383906 accacattatctcttcgttgtgacgaacagtaactatttcattttattactatgagttgtacctcaaaggctacatt 19383830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 5938716 - 5938779
Alignment:
Q  97 ttttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  5938716 ttttgttactatgagtcgtacctcatagtctacattatctcttcgttgtagcaaactgagtttt 5938779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 19384203 - 19384262
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  19384203 gttactatgagccgtacctcataggttacattatctcttcgtcgtagcaaacggagtttt 19384262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 19441049 - 19441111
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  19441049 tttgttactatgagtcgtacctcatagactacattatctcttcgtcgtagcaaacggagtttt 19441111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 19441116 - 19441170
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19441116 tttgttactacgagccgtacctcataggctacattatctcttcgttgtagcaaac 19441170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 28034723 - 28034785
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||    
T  28034723 tttgttactatgagttgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 28034785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 29896990 - 29897108
Alignment:
Q  20 accacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacct 119  Q
    |||||||||||| ||||||||||||||| |  |||||||||||| |||||||||||||| ||||||               |||||||||||||||||||    
T  29896990 accacattatcttttcgttgtggcgaacagagatataccacatt-tctcttcgttgtggtgaacgga--------------gttactatgagccgtacct 29897074  T
Q  120 cataggctacattatctcttcgttgtagcaaacg 153  Q
    ||||||||||||||| ||||||||||||||||||    
T  29897075 cataggctacattatttcttcgttgtagcaaacg 29897108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 29897110 - 29897168
Alignment:
Q  100 tgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtt 158  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  29897110 tgttactatgagccgtacctcataggctacattatctctttgttgtagcaaacagagtt 29897168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 19480046 - 19479989
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 155  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  19480046 tttgttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacgga 19479989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 2746838 - 2746780
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  2746838 ttactatgagccgtacctcataggctttattatctcttcgttgtagcaaacggattttt 2746780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 14521096 - 14521046
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 151  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14521096 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaa 14521046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 19384089 - 19384147
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||    
T  19384089 gttactatgagtcgtacctcataggctacattatctcttcgtcgtagcaaatggagttt 19384147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 13468120 - 13468048
Alignment:
Q  14 agatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggt 86  Q
    |||||||||||||||||| ||||||||||||||| |  || ||| |||||||||||||| |||||||||||||    
T  13468120 agatataccacattatctcttcgttgtggcgaaccgagatgtacaacattatctcttcgctgtggcgaacggt 13468048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 13468158 - 13468087
Alignment:
Q  12 agagatataccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaac 83  Q
    |||||||||||| ||||||| ||||||||| || |||   ||||||||||||||||||||||||||||||||    
T  13468158 agagatataccatattatctcttcgttgtgacggacgaagatataccacattatctcttcgttgtggcgaac 13468087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 19384332 - 19384375
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19384332 gttactatgagccgtacctcataggctacattatctcttcgttg 19384375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 29897166 - 29897226
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||| ||||||||||||  ||| ||||||||||||||||||||||| ||||||||    
T  29897166 gttactatgaaccgtacctcataaactatattatctcttcgttgtagcaaacagagttttt 29897226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 19384148 - 19384195
Alignment:
Q  112 ccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 159  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  19384148 ccgtacctcataggttacattatctcttcgtcgtagcaaacggagttt 19384195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 19384282 - 19384324
Alignment:
Q  118 ctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  19384282 ctcataggctacattatctcttcgtcgtagcaaacggagtttt 19384324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 19480110 - 19480050
Alignment:
Q  102 ttactatgagc-cgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||| ||||  |||||||    
T  19480110 ttactatgagcacgtacctcataggctacattatctcttcattgtaggaaacaaagttttt 19480050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 45227445 - 45227401
Alignment:
Q  41 ggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||  ||||||||||||||||||||||||||||||||||    
T  45227445 ggcgaacggagatataccacattatctcttcgttgtggcgaacgg 45227401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 45227283 - 45227234
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 151  Q
    ||||||| || |||||||||| ||||||||||||||||| ||||||||||    
T  45227283 ttactataagtcgtacctcatgggctacattatctcttcattgtagcaaa 45227234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 45227511 - 45227447
Alignment:
Q  20 accacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||| |||||||||| ||||||  ||||| |||||| |||||| ||||||||||||||    
T  45227511 accacattatctcttcgttgtggtgaacggagatatatcacatt-tctctttgttgtggcgaacgg 45227447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 19480177 - 19480125
Alignment:
Q  102 ttactatgagcc-gtacctcataggctacattatctcttcgttgtagcaaacg 153  Q
    |||||||||||  |||||||| || ||||||||||||||||||||||||||||    
T  19480177 ttactatgagcatgtacctcaaagactacattatctcttcgttgtagcaaacg 19480125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 28034860 - 28034906
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacg 153  Q
    |||||||||||||||||||||||||     ||||||||||||||||||||||    
T  28034860 ttactatgagccgtacctcataggc-----tatctcttcgttgtagcaaacg 28034906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 3482 - 3618
Alignment:
Q  23 acattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcat 122  Q
    ||||||||| |||||||||| |||||  ||||||||||||||||||||||||||||||||| ||   | || |||||  |||||||||||| ||||||||    
T  3482 acattatctcttcgttgtggggaacgaaaatataccacattatctcttcgttgtggcgaacagttctttttgcatttc-ttactatgagccttacctcat 3580  T
Q  123 aggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  3581 aggctacattatctcttcgttgtaataaacggagtttt 3618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 3623 - 3677
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3623 tttgttactatgacccgtacctcataggctacattatctcttcgttgtagcaaac 3677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 3690 - 3737
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3690 tttgttactatgagccgtacctcataggctacattatctcttcgttgt 3737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 69928 - 69830
Alignment:
Q  62 ttatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||||||| | ||||| |||||||||||||||||||||||||| ||| | |||||||||| |||||||||||||||||||||||||||||||    
T  69928 ttatctcttcgttgttgtgaacgataactatttcattttgttactatgagtcgtgcatcataggctatattatctcttcgttgtagcaaacggagtttt 69830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 69758 - 69695
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  69758 tttgttactatgagccgtacctcataggctacattatctcttcattgtagcaaacagatttttt 69695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 69825 - 69771
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  69825 tttgttactatgagttgtacctcataggctacattatctcttcgttgtagcaaac 69771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 16852 - 16790
Alignment:
Q  227 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctg 289  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16852 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctg 16790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 22207893 - 22207955
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22207893 tttgttactatgagccgtacctcataggttacattatctcttcgttgtagcaaacggagtttt 22207955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 14114817 - 14114754
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14114817 tttgttactatgagtcgtaccttataggctacattatctcttcgttgtagcaaacggagttttt 14114754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 22208027 - 22208082
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacg 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22208027 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacg 22208082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 22207757 - 22207819
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22207757 tttgttactataagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 22207819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 14115003 - 14114894
Alignment:
Q  56 accacattatctcttcgttgtggcgaacg--gtaactatttc--attttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 151  Q
    |||||||||||||||||||||||||||||  ||   | ||||  | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  14115003 accacattatctcttcgttgtggcgaacgaagtttttttttctcaatttgttactatgagccgcacctcgtaggctacattatctcttcgttgtagcaaa 14114904  T
Q  152 cggagttttt 161  Q
    | || |||||    
T  14114903 cagaattttt 14114894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 15088567 - 15088626
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  15088567 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacggagttttt 15088626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 22207692 - 22207751
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  22207692 ttactatgagccgtatctcataggctacattatctcttcgttgtagcaaacgaagttttt 22207751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 22207828 - 22207887
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  22207828 ttactatgagccgtaactcataggctacattatctcttcgttgtagcaaacgaagttttt 22207887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 22211175 - 22211234
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  22211175 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacggagttttt 22211234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 51844414 - 51844469
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggag 156  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51844414 gttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggag 51844469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 14114787 - 14114685
Alignment:
Q  59 acattatctcttcgttgtggcgaacggtaactatttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtt 158  Q
    |||||||||||||||||| || |||||    | | ||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||| |    
T  14114787 acattatctcttcgttgtagcaaacggagtttttctcaatttgttactatgagtcgtacctcataggttacattatctcttcattgtagcaaacggagat 14114688  T
Q  159 ttt 161  Q
    |||    
T  14114687 ttt 14114685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 22208098 - 22208148
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22208098 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 22208148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 51844344 - 51844402
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggag 156  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  51844344 tttgttactatgagtcgtacctcataggctacattatctcttcgctgtagcaaacggag 51844402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 15088630 - 15088687
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 155  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  15088630 tttgttactatgagccgtacctcatagactacattatctcttcattgtagcaaacgga 15088687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 22211238 - 22211295
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 155  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  22211238 tttgttactatgagccgtacctcatagactacattatctcttcattgtagcaaacgga 22211295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 14114886 - 14114823
Alignment:
Q  98 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||    
T  14114886 tttgttactatgagtcgtacctcgtaagctacattatctcttcgttgtagcaaacagagttttt 14114823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 22207964 - 22208023
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttttt 161  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||    
T  22207964 ttactatgagccgtacctcataggctacattatctcttggttgtagcaaacagaattttt 22208023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 22207625 - 22207683
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 160  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  22207625 ttactatgagccgtacctcatatgctacattatctcttcgttgtaacaaacggaatttt 22207683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 411807 - 411873
Alignment:
Q  19 taccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||| |||||||||||||||||  ||  |||||||||||||||||||||||| |||||    
T  411807 taccacattatctcttcgttgtggcgaacggagattaaccacattatctcttcgttgtggcaaacgg 411873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 411773 - 411837
Alignment:
Q  20 accacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||| |||||||||| ||||||  || |||||||||||||||||||||||||||||||    
T  411773 accacattatctcttcgttgtggtgaacggagat-taccacattatctcttcgttgtggcgaacgg 411837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 411844 - 411908
Alignment:
Q  20 accacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||| ||||||||||| |||||  || |||||||||||||||||||||||||||||||    
T  411844 accacattatctcttcgttgtggcaaacggagat-taccacattatctcttcgttgtggcgaacgg 411908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 411878 - 411948
Alignment:
Q  19 taccacattatctattcgttgtggcgaacggta----atataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||| |||||||||||||||||      ||  ||||||||||||||||||||||||||||||    
T  411878 taccacattatctcttcgttgtggcgaacggacggagattaaccacattatctcttcgttgtggcgaacgg 411948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 51844481 - 51844533
Alignment:
Q  101 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacg 153  Q
    |||| |||||| |||||||||||||||||||||||||||| || || ||||||    
T  51844481 gttattatgagtcgtacctcataggctacattatctcttcattataacaaacg 51844533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 40062 - 40001
Alignment:
Q  92 tttcattttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacg 153  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40062 tttccttttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacg 40001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 39985 - 39935
Alignment:
Q  102 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 152  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  39985 ttactatgagtcatacctcataggctacattatctcttcgttgtagcaaac 39935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 18763 - 18697
Alignment:
Q  19 taccacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||| |||||||||||||||||  ||  |||||||||||||||||||||||| |||||    
T  18763 taccacattatctcttcgttgtggcgaacggagattaaccacattatctcttcgttgtggcaaacgg 18697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 18726 - 18662
Alignment:
Q  20 accacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||| ||||||||||| |||||  || |||||||||||||||||||||||||||||||    
T  18726 accacattatctcttcgttgtggcaaacggagat-taccacattatctcttcgttgtggcgaacgg 18662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 18797 - 18733
Alignment:
Q  20 accacattatctattcgttgtggcgaacggtaatataccacattatctcttcgttgtggcgaacgg 85  Q
    |||||||||||| |||||||||| ||||||  || |||||||||||||||||||||||||||||||    
T  18797 accacattatctcttcgttgtggtgaacggagat-taccacattatctcttcgttgtggcgaacgg 18733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 18692 - 18622
Alignment:
Q  19 taccacattatctattcgttgtggcgaacggta----atataccacattatctcttcgttgtggcgaacgg 85  Q
    ||||||||||||| |||||||||||||||||      ||  ||||||||||||||||||||||||||||||    
T  18692 taccacattatctcttcgttgtggcgaacggacggagattaaccacattatctcttcgttgtggcgaacgg 18622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 27843 - 27809
Alignment:
Q  64 atctcttcgttgtggcgaacggtaactatttcatt 98  Q
    ||||||||||| |||||||||||||||||||||||    
T  27843 atctcttcgttatggcgaacggtaactatttcatt 27809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University