View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_high_28 (Length: 288)
Name: NF1420_high_28
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 18438248 - 18438517
Alignment:
| Q |
1 |
tgaatgtggaggacacttccctagagagggaacacttgtctcatcctccattcttaaaggttcctagttttgatgagcacttagtcttgcagccgagcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18438248 |
tgaatgtggaggacacttccctagagagggaacacttgtctcatcctccattcttaaaggttcctagttttgatgagcacttagtcttgcagccgagcat |
18438347 |
T |
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| Q |
101 |
cactcctatcactactaagaattcattgtaggcactaagaatgtgtctgctgcaagcttaaaaagtgcaaaaatcttgagtaaattttggggagatgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18438348 |
cactcctatcactactaagaattcattgtaggcactaagaatgtgtctgctgcaagcttaaaaagtgcaaaaatcttgagcaaattttggggagatgaga |
18438447 |
T |
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| Q |
201 |
tggacactgatgcttctgatggcacacattggaccctgaaactgactctgaagctcatcacaactctcattt |
272 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18438448 |
tggacactgatgcttctgatgg--cacattggaccctgaaactgactctgaagctcatcacaactctcattt |
18438517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 18449106 - 18449375
Alignment:
| Q |
1 |
tgaatgtggaggacacttccctagagagggaacacttgtctcatcctccattcttaaaggttcctagttttgatgagcacttagtcttgcagccgagcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18449106 |
tgaatgtggaggacacttccctagagagggaacacttgtctcatcctccattcttaaaggttcctagttttgatgagcacttagtcttgcagccgagcat |
18449205 |
T |
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| Q |
101 |
cactcctatcactactaagaattcattgtaggcactaagaatgtgtctgctgcaagcttaaaaagtgcaaaaatcttgagtaaattttggggagatgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18449206 |
cactcctatcactactaagaattcattgtaggcactaagaatgtgtctgctgcaagcttaaaaagtgcaaaaatcttgagcaaattttggggagatgaga |
18449305 |
T |
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| Q |
201 |
tggacactgatgcttctgatggcacacattggaccctgaaactgactctgaagctcatcacaactctcattt |
272 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18449306 |
tggacactgatgcttctgatgg--cacattggaccctgaaactgactctgaagctcatcacaactctcattt |
18449375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 18454199 - 18454468
Alignment:
| Q |
1 |
tgaatgtggaggacacttccctagagagggaacacttgtctcatcctccattcttaaaggttcctagttttgatgagcacttagtcttgcagccgagcat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18454199 |
tgaatgtggaggacacttccctagagagggaacacttgtctcatcctccattcttaaaggttcctagttttgatgagcacttagtcttgcagccgagcat |
18454298 |
T |
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| Q |
101 |
cactcctatcactactaagaattcattgtaggcactaagaatgtgtctgctgcaagcttaaaaagtgcaaaaatcttgagtaaattttggggagatgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18454299 |
cactcctatcactactaagaattcattgtaggcactaagaatgtgtctgctgcaagcttaaaaagtgcaaaaatcttgagcaaattttggggagatgaga |
18454398 |
T |
|
| Q |
201 |
tggacactgatgcttctgatggcacacattggaccctgaaactgactctgaagctcatcacaactctcattt |
272 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18454399 |
tggacactgatgcttctgatgg--cacattggaccctgaaactgactctgaagctcatcacaactctcattt |
18454468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 31609785 - 31609891
Alignment:
| Q |
120 |
aattcattgtaggcactaagaatgtgtctgctgcaagcttaaaaagtgcaaaaatcttgagtaaattttggggagatgagatggacactgatgcttctga |
219 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||||| | |||||||||| ||||||||||| |||| |
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| T |
31609785 |
aattcattgtaggtactaagaatgtgtctgctgcaaacttaaaaagtgaaaaaatcttgcacaaattttgagaagatgagatgaacactgatgctactga |
31609884 |
T |
|
| Q |
220 |
tggcaca |
226 |
Q |
| |
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| ||||| |
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| T |
31609885 |
tagcaca |
31609891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 31609700 - 31609749
Alignment:
| Q |
68 |
ttttgatgagcacttagtcttgcagccgagcatcactcctatcactacta |
117 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
31609700 |
ttttgatgagcactttgtcttgcagcctagcatcactcctatcactacta |
31609749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 31320127 - 31320170
Alignment:
| Q |
228 |
attggaccctgaaactgactctgaagctcatcacaactctcatt |
271 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
31320127 |
attggaccctgaaactgacttcgaagctcataacaactctcatt |
31320170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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