View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_high_29 (Length: 284)
Name: NF1420_high_29
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 44547388 - 44547143
Alignment:
| Q |
35 |
gatgcaagctatatttgacattgctgattacaatatgaagttacaaatgaaagagtagtttcgaaaatttgtttttatcgaaaacaacctctacctcacc |
134 |
Q |
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| T |
44547388 |
gatgcaagccatatttgacattgctgattacaatatgaaattacaaatgaaaaagtagtttcgacaatttgtttttatcgaaaacaacctctacctcacc |
44547289 |
T |
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| Q |
135 |
acctccnnnnnnnggtgcaccaaagaagttggatcatttcacactatcaactaagcgatcaacttctctctttgagcacgtcgtcactcaactcgtcat- |
233 |
Q |
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| T |
44547288 |
acctcc-aaaaaaggtgcaccaaagaagttggatcatttcacactatcaactaagcgatcaacttctctttttgaacacgttgtcactcaactcgtcatc |
44547190 |
T |
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| Q |
234 |
----------tgcactagttagtaatatgtctgatatgaccctcatt |
270 |
Q |
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| T |
44547189 |
ctgatacacgtgcactagttagtaatatgtctgatatgaccctcatt |
44547143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 32989368 - 32989317
Alignment:
| Q |
58 |
ctgattacaatatgaagttacaaatgaaagagtagtttcgaaaatttgtttt |
109 |
Q |
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| T |
32989368 |
ctgattacaatatgaagatacatatgaaagagtagtgtcgacaagttgtttt |
32989317 |
T |
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