View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1420_low_1 (Length: 706)

Name: NF1420_low_1
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1420_low_1
NF1420_low_1
[»] chr6 (6 HSPs)
chr6 (19-648)||(9771484-9772090)
chr6 (646-704)||(9771359-9771417)
chr6 (155-217)||(2718770-2718832)
chr6 (161-217)||(2721843-2721899)
chr6 (157-217)||(6134221-6134281)
chr6 (149-201)||(14289826-14289878)
[»] chr5 (5 HSPs)
chr5 (117-217)||(37247616-37247715)
chr5 (90-191)||(6887896-6887997)
chr5 (155-211)||(23325340-23325396)
chr5 (162-217)||(21253354-21253409)
chr5 (139-180)||(27983524-27983565)
[»] chr4 (13 HSPs)
chr4 (90-217)||(21315508-21315634)
chr4 (171-217)||(4848653-4848699)
chr4 (163-217)||(5198998-5199052)
chr4 (110-175)||(11440710-11440775)
chr4 (110-217)||(46824599-46824705)
chr4 (126-180)||(13198058-13198112)
chr4 (124-182)||(29866158-29866216)
chr4 (157-217)||(16962274-16962333)
chr4 (137-180)||(25968137-25968180)
chr4 (133-180)||(38411853-38411900)
chr4 (139-205)||(49583130-49583196)
chr4 (148-180)||(28147120-28147152)
chr4 (148-180)||(55606246-55606278)
[»] chr1 (7 HSPs)
chr1 (110-215)||(26828570-26828675)
chr1 (117-180)||(34664916-34664979)
chr1 (145-191)||(24909040-24909086)
chr1 (145-191)||(24909132-24909178)
chr1 (134-180)||(32617556-32617602)
chr1 (172-212)||(16422502-16422542)
chr1 (144-188)||(43579057-43579101)
[»] chr7 (7 HSPs)
chr7 (123-217)||(6218229-6218322)
chr7 (133-180)||(33049264-33049311)
chr7 (155-205)||(24118403-24118453)
chr7 (124-180)||(39653432-39653488)
chr7 (155-198)||(35451073-35451116)
chr7 (110-179)||(31743028-31743095)
chr7 (137-206)||(2301335-2301404)
[»] chr2 (7 HSPs)
chr2 (144-201)||(42237556-42237613)
chr2 (162-214)||(12352529-12352581)
chr2 (117-180)||(5430286-5430349)
chr2 (139-205)||(7441011-7441076)
chr2 (87-217)||(11445487-11445616)
chr2 (139-201)||(11808642-11808704)
chr2 (155-191)||(44705191-44705227)
[»] scaffold0472 (1 HSPs)
scaffold0472 (155-201)||(11810-11856)
[»] chr8 (5 HSPs)
chr8 (159-217)||(3424305-3424362)
chr8 (110-184)||(20762734-20762808)
chr8 (124-217)||(27054397-27054488)
chr8 (110-215)||(6196669-6196774)
chr8 (164-217)||(7411339-7411392)
[»] chr3 (2 HSPs)
chr3 (137-211)||(32104184-32104258)
chr3 (128-180)||(11783386-11783438)
[»] scaffold0191 (1 HSPs)
scaffold0191 (110-194)||(30852-30936)
[»] scaffold0526 (1 HSPs)
scaffold0526 (155-214)||(3345-3404)
[»] scaffold0006 (1 HSPs)
scaffold0006 (125-184)||(75592-75651)


Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 648
Target Start/End: Complemental strand, 9772090 - 9771484
Alignment:
Q  19 aactttactttcaaatttcaataattgcatagtagctccttgcaaggttttatataattgtcgaggt-gtgatcgcgttaaggatatcacattttcagct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||    
T  9772090 aactttactttcaaatttcaataattgcatagtagctccttgcaaggttttatataattgtcgaggtcgtgatcgcgttaaggatttcgcattttcagct 9771991  T
Q  118 gttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||                ||||||    
T  9771990 gttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatgttattaaaatta----------------atgtat 9771907  T
Q  218 cgcattttgtca--gtcgtaacagacatttcactatgatttttcttctctc--tgaaaaaatgtcaaaaaggtaacaatggctgcctataccttcatttc 313  Q
    ||||||||| ||  |||||||| |||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  9771906 cgcattttgccacagtcgtaacggacatttcactatgatttttcttctcaccgtgaaaaaatgtcaaaaaggtaacaatggctgcctataccttcatttc 9771807  T
Q  314 gcagtcctttttgcggtaatggatccgtctttaaaaccttttatgaagttattttgacttaatttgctagagatatgtaatgtgcttgatccaggtacat 413  Q
    ||            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9771806 gc------------ggtaatggatccgtctttaaaaccttttatgaagtcattttgacttaatttgctagagatatgtaatgtgcttgatccaggtacat 9771719  T
Q  414 ctttctgacctattgtatatttgtgtttttgttactcggattgcgagcggacacggagaggccttacttgagagtggacacactaagtagaagattggtg 513  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9771718 ctttctgacctattgtatatttgtgtttttgttacttggattgcgagcagacacggagaggccttacttgagagtggacacactaagtagaagattggtg 9771619  T
Q  514 ctactgctgagtgtggaattgaccttccatagtgatgatgttaatagcatgagaagagatggagaatctcagcattacatgctaacacacctgttaattt 613  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  9771618 ctactgcttagtgtggaattgaccttccatagagatgatgttaatagcatgagaagagatggagaatctcagcattacatgctaacacacctgtttgatt 9771519  T
Q  614 caaattaccatatgactccattaattcaaactatt 648  Q
    |||||||||||||||||||||||||||||||||||    
T  9771518 caaattaccatatgactccattaattcaaactatt 9771484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 646 - 704
Target Start/End: Complemental strand, 9771417 - 9771359
Alignment:
Q  646 attacaaagagtttggtaaagatgttttggtgtaatctagcttcagttttcctttgctt 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9771417 attacaaagagtttggtaaagatgttttggtgtaatctagcttcagttttcctttgctt 9771359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 2718832 - 2718770
Alignment:
Q  155 tgtgaattaatcacaacattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    ||||||||||||||||| || |||||||||||||||||||||||||| ||| |||||||||||    
T  2718832 tgtgaattaatcacaacctttcacaaatattattaaaattatttatattatcatataatgtat 2718770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 2721899 - 2721843
Alignment:
Q  161 ttaatcacaacattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||    
T  2721899 ttaatcacaaccttgcataaatattattaaaattatttatactatcatataatgtat 2721843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 6134221 - 6134281
Alignment:
Q  157 tgaattaatcacaacattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||||||    
T  6134221 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtat 6134281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 14289826 - 14289878
Alignment:
Q  149 tcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttata 201  Q
    ||||| ||||||||||||| ||||||| | |||| ||||||||||||||||||    
T  14289826 tcgcggtgtgaattaatcaaaacattgtataaatgttattaaaattatttata 14289878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 37247715 - 37247616
Alignment:
Q  117 tgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttatactattatataatgta 216  Q
    ||||| ||||||||| |||  ||||||||| |||||| |||||||||||||||||| ||||||||||||||| |||| |||||| |||| ||||| ||||    
T  37247715 tgttacggatgttgcgttacagattgtggttgtcgcggtgtgaattaatcacaacaatgcacaaatattatt-aaatcatttattctatcatatagtgta 37247617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 6887896 - 6887997
Alignment:
Q  90 tcgcgttaaggatatcacattttcagctgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattatta 189  Q
    ||||||||||| | || |  |||| ||||||| ||||||||| |||  ||||| | || ||||| |||||||| ||||||||| |||||||||||| |||    
T  6887896 tcgcgttaaggttgtcgcgatttcggctgttacggatgttgctttactgattgcgatcttcgcggtgtgaattgatcacaacaatgcacaaatattctta 6887995  T
Q  190 aa 191  Q
    ||    
T  6887996 aa 6887997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 23325340 - 23325396
Alignment:
Q  155 tgtgaattaatcacaacattgcacaaatattattaaaattatttatactattatata 211  Q
    ||||||| |||||||| |||||||| || |||||||||||||||| ||||| |||||    
T  23325340 tgtgaatcaatcacaaaattgcacatatcttattaaaattatttacactatcatata 23325396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 21253354 - 21253409
Alignment:
Q  162 taatcacaacattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    ||||||| | ||||| ||||| |||||||| ||||||||||||| |||||||||||    
T  21253354 taatcacgaaattgctcaaattttattaaacttatttatactatcatataatgtat 21253409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 27983524 - 27983565
Alignment:
Q  139 attgtggtcgtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    ||||||||||||||   |||||||||||||||||||||||||    
T  27983524 attgtggtcgtcgcagggtgaattaatcacaacattgcacaa 27983565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 21315508 - 21315634
Alignment:
Q  90 tcgcgttaaggatatcacattttcagctgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattatta 189  Q
    ||||||||||| | || |  |||||||||||| ||||||||| |||  ||||  |||||||||| |||||||||||||||||| |||||||||||||||     
T  21315508 tcgcgttaaggttttcgcgatttcagctgttacggatgttgcattacagattacggtcgtcgcggtgtgaattaatcacaacaatgcacaaatattatt- 21315606  T
Q  190 aaattatttatactattatataatgtat 217  Q
     ||| |||||| |||| ||||| |||||    
T  21315607 taatcatttattctatcatatagtgtat 21315634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 4848699 - 4848653
Alignment:
Q  171 cattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  4848699 cattgcacaaatattattaaaattatttatactatcatataatgtat 4848653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 5198998 - 5199052
Alignment:
Q  163 aatcacaacattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  5198998 aatcataacattgcacaaatattattaaaattatttatattatcatataatgtat 5199052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 11440775 - 11440710
Alignment:
Q  110 tttcagctgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattg 175  Q
    |||| ||||||| | ||||||| ||||||||||| || |||||| |||||||||||||||||||||    
T  11440775 tttcggctgttacgaatgttgcgttatggattgttgttgtcgcggtgtgaattaatcacaacattg 11440710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 46824599 - 46824705
Alignment:
Q  110 tttcagctgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttatactattata 209  Q
    |||||| |||||  |||||||| |||  ||||| | |||||||| ||| |||||||||||||| |||||||||||||||  ||| |||||| |||| |||    
T  46824599 tttcagatgttacagatgttgcattacagattgcgatcgtcgcggtgtaaattaatcacaacaatgcacaaatattatt-taatcatttattctatcata 46824697  T
Q  210 taatgtat 217  Q
    || |||||    
T  46824698 tagtgtat 46824705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 13198058 - 13198112
Alignment:
Q  126 tgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    |||||| ||| |||||||| | |||||| ||||||||||||||||||||||||||    
T  13198058 tgttgcgttaaggattgtgattgtcgcggtgtgaattaatcacaacattgcacaa 13198112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 29866216 - 29866158
Alignment:
Q  124 gatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaat 182  Q
    |||||||| |||  ||||||||| |||| | ||||||||||||||||||||||||||||    
T  29866216 gatgttgcgttacagattgtggttgtcgtggtgtgaattaatcacaacattgcacaaat 29866158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 16962333 - 16962274
Alignment:
Q  157 tgaattaatcacaacattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    |||||||||||| ||| ||||||||||||||| |||| |||||| |||| |||||||||||    
T  16962333 tgaattaatcacgacaatgcacaaatattatt-aaatcatttattctatcatataatgtat 16962274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 25968180 - 25968137
Alignment:
Q  137 ggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    |||||| ||| |||||| ||||||||||||||||||||||||||    
T  25968180 ggattgcggttgtcgcggtgtgaattaatcacaacattgcacaa 25968137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 38411853 - 38411900
Alignment:
Q  133 ttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    |||| ||||| ||| |||||| ||||||||||||||||||||||||||    
T  38411853 ttatagattgcggttgtcgcgctgtgaattaatcacaacattgcacaa 38411900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 49583130 - 49583196
Alignment:
Q  139 attgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttatactat 205  Q
    |||||||| |||||   |||||||||||||||||||||| || | |||| ||||||| |||||||||    
T  49583130 attgtggttgtcgcagcgtgaattaatcacaacattgcataagtcttataaaaattaattatactat 49583196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 28147152 - 28147120
Alignment:
Q  148 gtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    |||||| ||||||||||||||||||||||||||    
T  28147152 gtcgcggtgtgaattaatcacaacattgcacaa 28147120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 55606246 - 55606278
Alignment:
Q  148 gtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    ||||| |||||||||||||||||||||||||||    
T  55606246 gtcgcattgtgaattaatcacaacattgcacaa 55606278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 26828675 - 26828570
Alignment:
Q  110 tttcagctgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttatactattata 209  Q
    |||||| |||||  |||||||| |||  ||||||  | |||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||  |||    
T  26828675 tttcagttgttatagatgttgcattacagattgttattgtcgcggtgtaaattaatcacaacattgcacaaattttattaaacttatttatactaacata 26828576  T
Q  210 taatgt 215  Q
    ||||||    
T  26828575 taatgt 26828570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 34664979 - 34664916
Alignment:
Q  117 tgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    ||||| ||||||||| |||||||||||||| ||| || | ||||||||| ||||||||||||||    
T  34664979 tgttacggatgttgcattatggattgtggttgtcacggtatgaattaattacaacattgcacaa 34664916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 24909086 - 24909040
Alignment:
Q  145 gtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaa 191  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  24909086 gtcgttgcggtgtgaattaatcacaacaatgcacaaatattattaaa 24909040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 24909178 - 24909132
Alignment:
Q  145 gtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaa 191  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  24909178 gtcgttgcggtgtgaattaatcacaacaatgcacaaatattattaaa 24909132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 32617556 - 32617602
Alignment:
Q  134 tatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    ||||||||| ||| |||||| ||| ||||||||||||||||||||||    
T  32617556 tatggattgcggttgtcgcggtgtaaattaatcacaacattgcacaa 32617602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 16422542 - 16422502
Alignment:
Q  172 attgcacaaatattattaaaattatttatactattatataa 212  Q
    ||||||| ||| |||||||||||||||||||||| ||||||    
T  16422542 attgcacgaatcttattaaaattatttatactatcatataa 16422502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 43579101 - 43579057
Alignment:
Q  144 ggtcgtcgcgttgtgaattaatcacaacattgcacaaatattatt 188  Q
    ||||||| || |||||||||||||||||| | |||||||||||||    
T  43579101 ggtcgtcacggtgtgaattaatcacaacaatacacaaatattatt 43579057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 6218322 - 6218229
Alignment:
Q  123 ggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    ||||||||| |||  |||||||||||||||   ||||||||||||||||| ||||||||||||||| |||| |||||| |||| ||||| |||||    
T  6218322 ggatgttgcgttacagattgtggtcgtcgcaaagtgaattaatcacaacaatgcacaaatattatt-aaatcatttattctatcatatagtgtat 6218229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 33049311 - 33049264
Alignment:
Q  133 ttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  33049311 ttatggattgtggtcgtcgaggtgtgaattaatcaaaacattgcacaa 33049264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 24118453 - 24118403
Alignment:
Q  155 tgtgaattaatcacaacattgcacaaatattattaaaattatttatactat 205  Q
    |||||||| |||||||||||| |||||| |||||||||||||| |||||||    
T  24118453 tgtgaattcatcacaacattgtacaaatcttattaaaattattcatactat 24118403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 39653432 - 39653488
Alignment:
Q  124 gatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    |||||||| |||||||||||||| || ||| |||||||||||||||| ||| |||||    
T  39653432 gatgttgcgttatggattgtggttgttgcggtgtgaattaatcacaatattccacaa 39653488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 35451073 - 35451116
Alignment:
Q  155 tgtgaattaatcacaacattgcacaaatattattaaaattattt 198  Q
    ||||||||||||||||||||| || ||| |||||||||||||||    
T  35451073 tgtgaattaatcacaacattgtacgaattttattaaaattattt 35451116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 31743095 - 31743028
Alignment:
Q  110 tttcagctgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcaca 179  Q
    |||||| ||||| |||||| || |||||||  ||||||||||   |||||||||||||||||||||||||    
T  31743095 tttcagttgttacggatgtcgcgttatgga--gtggtcgtcgttgtgtgaattaatcacaacattgcaca 31743028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 2301404 - 2301335
Alignment:
Q  137 ggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttatactatt 206  Q
    |||||||| | |||||| ||| ||||||||  ||||| |||||||| || ||||||| ||||||||||||    
T  2301404 ggattgtgattgtcgcggtgtaaattaatcgtaacatagcacaaatcttgttaaaatcatttatactatt 2301335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 42237556 - 42237613
Alignment:
Q  144 ggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttata 201  Q
    |||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  42237556 ggtcttcgcggtgtgaattaaccacaacattgcacaaatcttattaaaattatttata 42237613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 12352529 - 12352581
Alignment:
Q  162 taatcacaacattgcacaaatattattaaaattatttatactattatataatg 214  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||    
T  12352529 taatcacaacattgcacaaatcttattaaacttatttacactatcatataatg 12352581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 5430349 - 5430286
Alignment:
Q  117 tgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    ||||| ||||||||| |||  ||||||||| |||||| |||||||||||||||| |||||||||    
T  5430349 tgttacggatgttgcattacagattgtggttgtcgcggtgtgaattaatcacaatattgcacaa 5430286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 7441076 - 7441011
Alignment:
Q  139 attgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttatactat 205  Q
    ||||| ||||||||  |||||||||||||||||| ||||| |||| |||||||||||| ||||||||    
T  7441076 attgttgtcgtcgcaatgtgaattaatcacaacaatgcacgaata-tattaaaattatgtatactat 7441011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 217
Target Start/End: Complemental strand, 11445616 - 11445487
Alignment:
Q  87 tgatcgcgttaaggatatcacattttcagctgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatatta 186  Q
    |||||||||||||| | ||||  |||| ||||||| ||||||||  | |  ||||| | || | ||| |||||||||||||||||| | ||| |||||||    
T  11445616 tgatcgcgttaaggttgtcacgatttcggctgttatggatgttgtgtcacagattgcgttcattgcggtgtgaattaatcacaacaatccacgaatatta 11445517  T
Q  187 ttaaaattatttatactattatataatgtat 217  Q
    || |||| |||||| |||| |||||||||||    
T  11445516 tt-aaatcatttattctatcatataatgtat 11445487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 11808704 - 11808642
Alignment:
Q  139 attgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttata 201  Q
    |||||| | |||||| ||||||||||| ||||||||||||||||  || ||||||||||||||    
T  11808704 attgtgattgtcgcggtgtgaattaattacaacattgcacaaatgataataaaattatttata 11808642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 44705227 - 44705191
Alignment:
Q  155 tgtgaattaatcacaacattgcacaaatattattaaa 191  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  44705227 tgtgaatgaatcacaacattgcacaaatcttattaaa 44705191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 11810 - 11856
Alignment:
Q  155 tgtgaattaatcacaacattgcacaaatattattaaaattatttata 201  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  11810 tgtgaattaaccacaacattgcacaaatcttattaaaattatttata 11856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 3424305 - 3424362
Alignment:
Q  159 aattaatcacaacattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||    
T  3424305 aattaatcacaacaatgcacaa-tattataaaaattatttatactatcatataatgtat 3424362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 20762734 - 20762808
Alignment:
Q  110 tttcagctgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatat 184  Q
    |||| ||||||| ||||||||| |||  ||||| |||||||||| ||||||||||||| |||| |||||||||||    
T  20762734 tttcggctgttacggatgttgcgttactgattgcggtcgtcgcggtgtgaattaatcagaacaatgcacaaatat 20762808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 27054397 - 27054488
Alignment:
Q  124 gatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    |||||||| |||| ||||| |||| ||||| ||| |||||||||||||| | ||||||||||||| |||| |||||| |||| |||||||||||    
T  27054397 gatgttgcgttatagattgcggtcatcgcggtgt-aattaatcacaacaatccacaaatattatt-aaatcatttattctatcatataatgtat 27054488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 6196774 - 6196669
Alignment:
Q  110 tttcagctgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttatactattata 209  Q
    |||| ||||||||||||| ||| |||   |||| |||||| | | ||||| |||||||||||| ||||||||| |||| |||| ||||| | ||||  ||    
T  6196774 tttcggctgttaaggatgctgcattacatattgcggtcgttgtggtgtgagttaatcacaacaatgcacaaatcttatcaaaagtatttgtgctatccta 6196675  T
Q  210 taatgt 215  Q
    ||||||    
T  6196674 taatgt 6196669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 7411339 - 7411392
Alignment:
Q  164 atcacaacattgcacaaatattattaaaattatttatactattatataatgtat 217  Q
    ||||||||||| ||||||| |||||||||||||||||  |||  ||||||||||    
T  7411339 atcacaacatttcacaaatcttattaaaattatttatgatatcttataatgtat 7411392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 32104184 - 32104258
Alignment:
Q  137 ggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaattatttatactattatata 211  Q
    ||||||| || |||||| ||| ||||||||||||||| |||||||  ||||||||||||||||| |||| |||||    
T  32104184 ggattgttgtagtcgcggtgtaaattaatcacaacatggcacaaacgttattaaaattatttatgctatcatata 32104258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 11783386 - 11783438
Alignment:
Q  128 ttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaa 180  Q
    |||| ||| |||||||||| ||||| ||||||| |||| ||||||||||||||    
T  11783386 ttgcgttacggattgtggttgtcgctttgtgaagtaattacaacattgcacaa 11783438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 30936 - 30852
Alignment:
Q  110 tttcagctgttaaggatgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatattattaaaatt 194  Q
    |||||||||||| | ||  ||| |||| ||||||||| || ||  |||||||||||||||||| ||||||| |||||||||||||    
T  30936 tttcagctgttaggtattctgcgttatagattgtggttgttgcagtgtgaattaatcacaacaatgcacaagtattattaaaatt 30852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 3404 - 3345
Alignment:
Q  155 tgtgaattaatcacaacattgcacaaatattattaaaattatttatactattatataatg 214  Q
    ||||||||||||||||||||||||||||  || | |||||||||||||||| | ||||||    
T  3404 tgtgaattaatcacaacattgcacaaattataattaaattatttatactatcagataatg 3345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 75651 - 75592
Alignment:
Q  125 atgttgccttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaaatat 184  Q
    ||||||| |||  ||||| |||||||||| ||||||||||||| |||| |||||||||||    
T  75651 atgttgcgttactgattgcggtcgtcgcggtgtgaattaatcagaacaatgcacaaatat 75592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University