View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1420_low_11 (Length: 473)

Name: NF1420_low_11
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1420_low_11
NF1420_low_11
[»] chr8 (5 HSPs)
chr8 (75-305)||(43637634-43637848)
chr8 (79-170)||(34649010-34649101)
chr8 (133-171)||(33484255-33484293)
chr8 (266-305)||(33484438-33484476)
chr8 (79-128)||(38761018-38761067)
[»] chr1 (6 HSPs)
chr1 (19-79)||(18437982-18438042)
chr1 (19-79)||(18448840-18448900)
chr1 (19-79)||(18453933-18453993)
chr1 (31-79)||(18423717-18423765)
chr1 (79-170)||(26939682-26939773)
chr1 (72-164)||(39502786-39502878)
[»] chr2 (3 HSPs)
chr2 (74-170)||(27337841-27337939)
chr2 (85-144)||(10914225-10914284)
chr2 (78-122)||(4917650-4917694)
[»] chr7 (2 HSPs)
chr7 (77-166)||(45052507-45052596)
chr7 (77-130)||(11314833-11314886)
[»] chr3 (1 HSPs)
chr3 (83-144)||(28884812-28884873)
[»] scaffold0143 (1 HSPs)
scaffold0143 (133-171)||(2384-2423)
[»] chr4 (2 HSPs)
chr4 (79-170)||(56051814-56051905)
chr4 (85-165)||(43277832-43277912)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 75 - 305
Target Start/End: Original strand, 43637634 - 43637848
Alignment:
Q  75 atttacactatgtttggtaggggtgaaataggggagaaagaaattgaagagagagagtttgaagagaaatgttgaatttctcttgtttggtttgaatata 174  Q
    ||||||||||||||||||||||||||||||||||||| ||||              ||||||||||||||||||||||| ||||||||||||||| || |    
T  43637634 atttacactatgtttggtaggggtgaaataggggagagagaa--------------gtttgaagagaaatgttgaatttttcttgtttggtttgattaga 43637719  T
Q  175 aatagggnnnnnnnnnnnntataaagcgtgggacccacacactttattcttctccccaaaaatgcgaagaaagagctacgaaaggctgcactttttctta 274  Q
    |||||||            |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  43637720 aataggggagagagaga--tatagagcatgggacccacacactttattcttctccccaaaaatgcgaagaaagagctgagaaaggctgcattttttctta 43637817  T
Q  275 tttccacctttgcccttgattatgtgcaaca 305  Q
    ||||||| |||||||||| ||||||||||||    
T  43637818 tttccacatttgcccttggttatgtgcaaca 43637848  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 34649010 - 34649101
Alignment:
Q  79 acactatgtttggtaggggtgaaataggggagaaagaaattgaagagagagagtttgaagagaaatgttgaatttctcttgtttggtttgaa 170  Q
    ||||| |||||||| ||||||||||| || ||| |||| |||  ||||||||| |||||||||||  || |||||||| |||||||||||||    
T  34649010 acactgtgtttggttggggtgaaataaggaagagagaagttggggagagagagattgaagagaaagatttaatttctcctgtttggtttgaa 34649101  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 33484255 - 33484293
Alignment:
Q  133 ttgaagagaaatgttgaatttctcttgtttggtttgaat 171  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33484255 ttgaagagaaatgttgaatttctcttgtttggtttgaat 33484293  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 33484438 - 33484476
Alignment:
Q  266 tttttcttatttccacctttgcccttgattatgtgcaaca 305  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  33484438 tttttctt-tttccacctttgcccttgattatgtgcaaca 33484476  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 38761067 - 38761018
Alignment:
Q  79 acactatgtttggtaggggtgaaataggggagaaagaaattgaagagaga 128  Q
    ||||| |||||||| || ||||||||||| ||| ||||||||||||||||    
T  38761067 acactgtgtttggttggagtgaaatagggaagagagaaattgaagagaga 38761018  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 18438042 - 18437982
Alignment:
Q  19 caaataggttccgatatgaaacttatgatttctcaataaaaattgtttcttttatcattta 79  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18438042 caaataggttccgatatgaaacttatgatttctcaacaaaaattgtttcttttatcattta 18437982  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 18448900 - 18448840
Alignment:
Q  19 caaataggttccgatatgaaacttatgatttctcaataaaaattgtttcttttatcattta 79  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18448900 caaataggttccgatatgaaacttatgatttctcaacaaaaattgtttcttttatcattta 18448840  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 18453993 - 18453933
Alignment:
Q  19 caaataggttccgatatgaaacttatgatttctcaataaaaattgtttcttttatcattta 79  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18453993 caaataggttccgatatgaaacttatgatttctcaacaaaaattgtttcttttatcattta 18453933  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 18423765 - 18423717
Alignment:
Q  31 gatatgaaacttatgatttctcaataaaaattgtttcttttatcattta 79  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  18423765 gatacgaaacttatgatttctcaaaaaaaattgtttcttttatcattta 18423717  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 26939682 - 26939773
Alignment:
Q  79 acactatgtttggtaggggtgaaataggggagaaagaaattgaagagagagagtttgaagagaaatgttgaatttctcttgtttggtttgaa 170  Q
    ||||| |||||||| ||||||||||| || ||| |||| |||  ||||||||| |||||||||||  || |||||||||||||| |||||||    
T  26939682 acactgtgtttggttggggtgaaataaggaagagagaagttggggagagagagattgaagagaaagattcaatttctcttgtttagtttgaa 26939773  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 39502878 - 39502786
Alignment:
Q  72 atcatttacactatgtttggtaggggtgaaataggggagaaagaaattgaagagagagagtttgaagagaaatgttgaatttctcttgtttgg 164  Q
    |||||||||||| |||||||||  |||||| |||| |||| |||| || ||| ||||||  |||||||||| || || |||||||| ||||||    
T  39502878 atcatttacactgtgtttggtaaaggtgaattaggtgagagagaagttaaagcgagagaaattgaagagaagtggtgtatttctctcgtttgg 39502786  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 27337939 - 27337841
Alignment:
Q  74 catttacactatgtttggtaggggtgaaataggggagaaagaaattga--agagagagagtttgaagagaaatgttgaatttctcttgtttggtttgaa 170  Q
    ||||| |||| |||||||| ||||||||||| || ||| |||| |||   |||||||||| |||||||||||  || |||||||| |||||||||||||    
T  27337939 catttgcactgtgtttggttggggtgaaataaggaagagagaagttggggagagagagagattgaagagaaagattcaatttctcctgtttggtttgaa 27337841  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 10914284 - 10914225
Alignment:
Q  85 tgtttggtaggggtgaaataggggagaaagaaattgaagagagagagtttgaagagaaat 144  Q
    |||||||||| || |||| |||||||| ||| ||||||||||||||  ||||||||||||    
T  10914284 tgtttggtagaggagaaaaaggggagagagagattgaagagagagaagttgaagagaaat 10914225  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 4917694 - 4917650
Alignment:
Q  78 tacactatgtttggtaggggtgaaataggggagaaagaaattgaa 122  Q
    |||||| |||||||| || ||||||||||||||| ||||||||||    
T  4917694 tacactgtgtttggttggagtgaaataggggagagagaaattgaa 4917650  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 45052507 - 45052596
Alignment:
Q  77 ttacactatgtttggtaggggtgaaataggggagaaagaaattgaagagagagagtttgaagagaaatgttgaatttctcttgtttggtt 166  Q
    ||||||||||||||||||  | |||| ||| |||| |||| |||||||||||||  | | |||||| | ||| |||||||||||||||||    
T  45052507 ttacactatgtttggtagaagagaaaaaggagagagagaagttgaagagagagaaataggagagaagtcttgcatttctcttgtttggtt 45052596  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 11314833 - 11314886
Alignment:
Q  77 ttacactatgtttggtaggggtgaaataggggagaaagaaattgaagagagaga 130  Q
    |||||||||||||||||| || |||| ||| |||| |||| |||||||||||||    
T  11314833 ttacactatgtttggtagaggagaaaaaggagagagagaagttgaagagagaga 11314886  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 28884812 - 28884873
Alignment:
Q  83 tatgtttggtaggggtgaaataggggagaaagaaattgaagagagagagtttgaagagaaat 144  Q
    |||||||||||| || |||| |||||||| |||  |||||||||||||| ||||||||||||    
T  28884812 tatgtttggtagaggagaaaaaggggagagagaggttgaagagagagaggttgaagagaaat 28884873  T

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Target: scaffold0143 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 2423 - 2384
Alignment:
Q  133 ttgaagagaaatgttgaatttctcttg-tttggtttgaat 171  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  2423 ttgaagagaaatgttgaatttctcttgttttggtttgaat 2384  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 56051905 - 56051814
Alignment:
Q  79 acactatgtttggtaggggtgaaataggggagaaagaaattgaagagagagagtttgaagagaaatgttgaatttctcttgtttggtttgaa 170  Q
    ||||| |||||||| ||||||||||| || ||| |||| |||   |||||||  |||||||||||  || |||||||| |||||||||||||    
T  56051905 acactgtgtttggttggggtgaaataaggaagagagaagttgggaagagagaagttgaagagaaagattcaatttctcctgtttggtttgaa 56051814  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 43277912 - 43277832
Alignment:
Q  85 tgtttggtaggggtgaaataggggagaaagaaattgaagagagagagtttgaagagaaatgttgaatttctcttgtttggt 165  Q
    |||||||||| || |||| ||| |||| ||| ||||||||||||||  ||||||||||||     ||||||||||||||||    
T  43277912 tgtttggtagaggagaaaaaggagagagagagattgaagagagagaagttgaagagaaataccacatttctcttgtttggt 43277832  T

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