View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_14 (Length: 408)
Name: NF1420_low_14
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 6241605 - 6241981
Alignment:
| Q |
20 |
caataatgtgaacaccttctcggaaaaagccctagccatccatgtcatacacactataaccaacttgcataaagcgctgaagatcctccataggagcact |
119 |
Q |
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| T |
6241605 |
caataatgtgaacaccttctcggaaaaagccctcgccatccatgtcatacacactataaccaacttgcataaagcgctgaagatcctccacaggagcact |
6241704 |
T |
|
| Q |
120 |
tatcccgccgacacaagcatgaatccttacaccatggaattgaccaagatcttgcataacctgcttaatctgtaaagctagctcgttggttggggccaaa |
219 |
Q |
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| T |
6241705 |
tatcccgccgacacaagcatgaatccttacaccatggaattgaccaagatcttgcataacctgcttaatctgtaaagctagctcgttggttggggccaaa |
6241804 |
T |
|
| Q |
220 |
accaaagcctggcaatgagccaattcataatcaagcatcttcagaattccaatacagaatgttgctgacatcccggttccagatggatcctgtagaatca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6241805 |
accaaagcctggcaatgagccaattcataatcaagcatcttcagaattccaatacagaatgttgctgacatcccggttccagatggatcctgtagaatca |
6241904 |
T |
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| Q |
320 |
catcctggccttcgcagaaaggaggaattaccattttctgaattgaagagggcctcccaaattcttcacaacagaat |
396 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6241905 |
catcgtggcctttgcagaaaggaggaattaccattttctgaattgaagagggcctcccaaattcttcacaacagaat |
6241981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 195 - 342
Target Start/End: Original strand, 6250712 - 6250859
Alignment:
| Q |
195 |
agctagctcgttggttggggccaaaaccaaagcctggcaatgagccaattcataatcaagcatcttcagaattccaatacagaatgttgctgacatcccg |
294 |
Q |
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| T |
6250712 |
agctagctcccttgttggggccaaaaccaaggcctggcactgaactaatccataatcaagctgctgcaaaattccagagcagaatgttgctgtcttccca |
6250811 |
T |
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| Q |
295 |
gttccagatggatcctgtagaatcacatcctggccttcgcagaaagga |
342 |
Q |
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| T |
6250812 |
gttccagactgagcctgttgaatcacatccagacctttgcagaaagga |
6250859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 74 - 380
Target Start/End: Complemental strand, 17544739 - 17544433
Alignment:
| Q |
74 |
tataaccaacttgcataaagcgctgaagatcctccataggagcacttatcccgccgacacaagcatgaatccttacaccatggaattgaccaagatcttg |
173 |
Q |
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| T |
17544739 |
tataaccaactttgagaaagcgctgacgatcctccttcggaacacttgtccccccgacacatgcatgaatctttacaccatggaatctaccaagatcttg |
17544640 |
T |
|
| Q |
174 |
cataacctgcttaatctgtaaagctagctcgttggttggggccaaaaccaaagcctggcaatgagccaattcataatcaagcatcttcagaattccaata |
273 |
Q |
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| T |
17544639 |
cataacctccttaatctgtaaaaccagctccatggttggggccaaaaccaaagcctggcaatgaaccaatccataatcaagcttcttcagaattccaata |
17544540 |
T |
|
| Q |
274 |
cagaatgttgctgacatcccggttccagatggatcctgtagaatcacatcctggccttcgcagaaaggaggaattaccattttctgaattgaagagggcc |
373 |
Q |
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||||||||| || ||||||| |||||| ||||||| |||||||||||| || ||||| |||||||||| ||||||| ||| ||| ||||||||||||| |
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| T |
17544539 |
cagaatgtttctaacatcccagttccatatggatcttgtagaatcacacccaaaccttcacagaaaggagcaattaccctttgctggattgaagagggcc |
17544440 |
T |
|
| Q |
374 |
tcccaaa |
380 |
Q |
| |
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||||||| |
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| T |
17544439 |
tcccaaa |
17544433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 380
Target Start/End: Original strand, 272999 - 273069
Alignment:
| Q |
310 |
tgtagaatcacatcctggccttcgcagaaaggaggaattaccattttctgaattgaagagggcctcccaaa |
380 |
Q |
| |
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|||| |||||||||| ||||| |||||||||| ||||||||||| ||| |||||||| ||||||||||| |
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| T |
272999 |
tgtaaaatcacatccaaaccttcacagaaaggagcaattaccatttgctggattgaagaaggcctcccaaa |
273069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 875211 - 875141
Alignment:
| Q |
310 |
tgtagaatcacatcctggccttcgcagaaaggaggaattaccattttctgaattgaagagggcctcccaaa |
380 |
Q |
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|||| |||||||||| ||||| |||||||||| ||||||||||| ||| |||||||| ||||||||||| |
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| T |
875211 |
tgtaaaatcacatccaaaccttcacagaaaggagcaattaccatttgctggattgaagaaggcctcccaaa |
875141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 42717803 - 42717756
Alignment:
| Q |
208 |
gttggggccaaaaccaaagcctggcaatgagccaattcataatcaagc |
255 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||| ||||||||||| |
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| T |
42717803 |
gttggggccaaaaccaaagcctggcactgaaccaaaccataatcaagc |
42717756 |
T |
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