View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1420_low_15 (Length: 403)

Name: NF1420_low_15
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1420_low_15
NF1420_low_15
[»] chr8 (2 HSPs)
chr8 (44-377)||(21271271-21271606)
chr8 (267-306)||(12573875-12573914)
[»] chr4 (2 HSPs)
chr4 (1-43)||(12366661-12366703)
chr4 (267-320)||(56252460-56252513)
[»] chr5 (1 HSPs)
chr5 (267-329)||(30424319-30424381)
[»] chr3 (1 HSPs)
chr3 (260-307)||(33682288-33682335)
[»] chr1 (4 HSPs)
chr1 (260-327)||(15967880-15967947)
chr1 (259-309)||(11990697-11990746)
chr1 (260-298)||(29492740-29492778)
chr1 (260-312)||(27301114-27301166)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 44 - 377
Target Start/End: Original strand, 21271271 - 21271606
Alignment:
Q  44 aaccaaatggaccaagagggaaatgggaaacgaaaaatgtgtaaggtactttgttgattaactgctcctatttcaaaccaatgtatttgagtgcaaaatc 143  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||||||  |||||||||||||| |    
T  21271271 aaccaaatggaccaagagggaaatgggaaatgaaaaatgtgtaagggactttgttgattaacagcacctatttcaaaccaattgatttgagtgcaaaaac 21271370  T
Q  144 attatctgctata--ctctattgccaaagataaatggcagttgacaaataataataatatgtcttataatttaattccaactgttattccaaaacagact 241  Q
    |||| ||||||||  |||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||    
T  21271371 attaactgctatatactctatagccaaagataaatggcagttgacaaataataaaaatatgacttataatttcattccaactgttattctaaaacagact 21271470  T
Q  242 aagatggtagaaccaccatggaccaggaaaacccggataaaggacacaatgcccttcataagggcccaaatgagcataaccgcccttccgaaatagacta 341  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21271471 aagatggtagaaccaccatggaccgggaaaacccggataaaggacacaatgcccttcataagggcccaaatgagcataaccacccttccgaaatagacta 21271570  T
Q  342 aggcagcgcctttgtagacaccaccaataagcaggt 377  Q
    |||| |||||||| ||||||||||||||||||||||    
T  21271571 aggcggcgcctttatagacaccaccaataagcaggt 21271606  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 12573914 - 12573875
Alignment:
Q  267 ggaaaacccggataaaggacacaatgcccttcataagggc 306  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  12573914 ggaaaacccggataaaggacacaaggcctttcataagggc 12573875  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12366661 - 12366703
Alignment:
Q  1 gctagctaactcgaattaaccatcatttggatcctcaaaagca 43  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  12366661 gctagctaactcgaactaaccatcatttggatcctcaaaagca 12366703  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 56252513 - 56252460
Alignment:
Q  267 ggaaaacccggataaaggacacaatgcccttcataagggcccaaatgagcataa 320  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  56252513 ggaaaacccggataaaggacataatgcccttcacaagggctcaaatgaacataa 56252460  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 30424381 - 30424319
Alignment:
Q  267 ggaaaacccggataaaggacacaatgcccttcataagggcccaaatgagcataaccgcccttc 329  Q
    |||||||||||||||||||||||||| ||||||||||| | || |||| ||||| | ||||||    
T  30424381 ggaaaacccggataaaggacacaatgtccttcataaggactcagatgatcataagcacccttc 30424319  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 33682288 - 33682335
Alignment:
Q  260 tggaccaggaaaacccggataaaggacacaatgcccttcataagggcc 307  Q
    |||||| ||||||| ||| |||||||||||| ||||||||||||||||    
T  33682288 tggaccgggaaaacacgggtaaaggacacaacgcccttcataagggcc 33682335  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 15967880 - 15967947
Alignment:
Q  260 tggaccaggaaaacccggataaaggacacaatgcccttcataagggcccaaatgagcataaccgccct 327  Q
    |||||| |||||||| ||||||||||||  |  |||||||||||||| ||||||| ||||| ||||||    
T  15967880 tggaccgggaaaaccaggataaaggacatcacacccttcataagggctcaaatgaacataaacgccct 15967947  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 11990697 - 11990746
Alignment:
Q  259 atggaccaggaaaacccggataaaggacacaatgcccttcataagggccca 309  Q
    ||||||| ||||||||||||| |||||||||| ||||||| ||||||||||    
T  11990697 atggaccgggaaaacccggat-aaggacacaaggcccttcctaagggccca 11990746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 29492740 - 29492778
Alignment:
Q  260 tggaccaggaaaacccggataaaggacacaatgcccttc 298  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  29492740 tggaccgggaaaacccggataaatgacacaatgcccttc 29492778  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 27301114 - 27301166
Alignment:
Q  260 tggaccaggaaaacccggataaaggacacaatgcccttcataagggcccaaat 312  Q
    |||||| ||||||||||  | ||||||||||||||||||| |||||| |||||    
T  27301114 tggaccgggaaaacccgattgaaggacacaatgcccttcacaagggctcaaat 27301166  T

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