View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_16 (Length: 399)
Name: NF1420_low_16
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 40614373 - 40614021
Alignment:
| Q |
19 |
aagtaccccaagaaagcaacgtatgctctcaattaaagactgagcacatggagatgcatttattttggacctgatgtaactaaaaattgggctcatcacc |
118 |
Q |
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| T |
40614373 |
aagtaccccaagaaagcaacgtatgctctcaattaaagactgagcacatggagatgcatttattttggacctgatgtaactaaaaattgggttcatcacc |
40614274 |
T |
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| Q |
119 |
tcaacctataaacaacacttaaattagaagttagaatgcgactcctcttatcaatatttccagcatcaatcatgcaagaaagaannnnnnnngaagaagg |
218 |
Q |
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| T |
40614273 |
tcaaccta--------------attagaagttagaatgcgactcctcttatcaatatttccagcatcaatcatgcaagaaataattttttt-----aagg |
40614193 |
T |
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| Q |
219 |
gtaaaatgaaatatattaatgctaaatctca-tctctacagcacaaggtgtatcgagaaagaggatnnnnnnnttatataattgtgttacaaaaaccgca |
317 |
Q |
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| T |
40614192 |
gtaaaatgaaatatattaatgctaaatctcactctctaccgcacaaggtgtatcgagaaagaggataaaaaaattatataattttgttacaaaaaccgca |
40614093 |
T |
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| Q |
318 |
agagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaaggattaagccatcacctatg |
389 |
Q |
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| T |
40614092 |
agagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacattaaaggattaagccaccacctatg |
40614021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 59 - 389
Target Start/End: Complemental strand, 40617650 - 40617334
Alignment:
| Q |
59 |
tgagcacatggagatgcatttattttggacctgatgtaactaaaaattgggctcatcacctcaacctataaacaacacttaaattagaagttagaatgcg |
158 |
Q |
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| T |
40617650 |
tgagcacatggagatgcatttattttggacctgatgtaactaaaaattgggttcatcacctcaacct--------------aattagaagttagaatgcg |
40617565 |
T |
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| Q |
159 |
actcctcttatcaatatttccagcatcaatcatgcaagaaagaannnnnnnngaagaagggtaaaatgaaatatattaatgctaaatctca-tctctaca |
257 |
Q |
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| T |
40617564 |
actcctctcatcaatatttccagcatcaatcatgcaagaaag-attttttttgaagaagggtaaaatgaaatacattactgctaaatcgcactctctcca |
40617466 |
T |
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| Q |
258 |
gcacaaggtgtatcgagaaagaggatnnnnnnnttatataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcagcatatgccc |
357 |
Q |
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| T |
40617465 |
atataaggtgtactgaagaagaggttaaaaaagttatataattgtgttacaaaacccgcaagagcaaaaccaaggagtgaaacaaaatcaacatatgccc |
40617366 |
T |
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| Q |
358 |
acatacatcaaaggattaagccatcacctatg |
389 |
Q |
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| T |
40617365 |
acacacaacaaaaggttaagccaccatctatg |
40617334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 40610418 - 40610375
Alignment:
| Q |
19 |
aagtaccccaagaaagcaacgtatgctctcaattaaagactgag |
62 |
Q |
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| T |
40610418 |
aagtaccccaagaaagcaacttaagctctcaattaaagactgag |
40610375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 12243807 - 12243713
Alignment:
| Q |
295 |
ataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaaggattaagccatcacctatg |
389 |
Q |
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|||| |||||| |||||||||||||| ||||||||||||| |||||||| ||||| |||||||||| ||| ||| | |||||||| | |||||| |
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| T |
12243807 |
ataaatgtgtttcaaaaaccgcaagaacaaaaccaaggaaagaaacaaagtcagcctatgcccacacacaacaaggagttaagccaccgcctatg |
12243713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 41238349 - 41238405
Alignment:
| Q |
315 |
gcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaagg |
371 |
Q |
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|||||| ||||||||||||| ||||||||||||| ||||||| | |||||||||| |
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| T |
41238349 |
gcaagaacaaaaccaaggaaagaaacaaaatcagtctatgcccgtacacatcaaagg |
41238405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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