View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_17 (Length: 395)
Name: NF1420_low_17
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_17 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 45766777 - 45766398
Alignment:
| Q |
16 |
tgaagtttggtacatatacaagcaattttcaaattgtggttaatatatgaacatcattcaatttcaaggttttagttttaatatgaaacataaatttgat |
115 |
Q |
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| T |
45766777 |
tgaagtttggtacttatacaaacaatttttaaattgtggttaatatatgaacatcattcaatttcaaggttttaattttaatatgaaacataaatttgat |
45766678 |
T |
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| Q |
116 |
annnnnnncatttaaatgtataaataggtcaagatcaatggccacaaaatttgtctaggtggnnnnnnngtttgagaactactataaatctaggcaactt |
215 |
Q |
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| T |
45766677 |
atttttttcattcaaatgtataaataggtcaagaccaatggccacaaaatttttctaggtagtttttttgtttgagaactactataaatctaggcaactt |
45766578 |
T |
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| Q |
216 |
cctaaaataaatacttgactcttaactttaatcacaatttattgcaaataaaaatctattcggtccctaaataaacatatacagaatggcaaataataaa |
315 |
Q |
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| T |
45766577 |
cctaaaataaatacttgactcttaactttaatcacaatttattgcaaataaaaatctattcggtccctaattaaacatatacagaatggcaaataataaa |
45766478 |
T |
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| Q |
316 |
caaagttgtaatttttagttttaatgaatatacaaacatcattgaaaatcaagattttggttttaatatgcaatgtgcct |
395 |
Q |
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| T |
45766477 |
caaagttgtaacttttagttttaatgaatatacaaacatcattcaaaatcaaaattttggttttaatatgcaatgtgcct |
45766398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 45767753 - 45767710
Alignment:
| Q |
57 |
aatatatgaacatcattcaatttcaaggttttagttttaatatg |
100 |
Q |
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| T |
45767753 |
aatatacgaacatcattcaaattcaaagttttagttttaatatg |
45767710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 45767573 - 45767487
Alignment:
| Q |
235 |
tcttaactttaatcacaatttattgcaaataaaaatctattcggtccctaaataaacatatacagaatggcaaataataaacaaagt |
321 |
Q |
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| T |
45767573 |
tcttaacttttatcatagtttattgcgaattaaaatatattcaatttctaattaaacgtatacagaatgacaaataataaataaagt |
45767487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 45766382 - 45766341
Alignment:
| Q |
126 |
tttaaatgtataaataggtcaagatcaatggccacaaaattt |
167 |
Q |
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| T |
45766382 |
tttaaatgtataaaaagatcaagaccaatggccacaaaattt |
45766341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 45769697 - 45769661
Alignment:
| Q |
58 |
atatatgaacatcattcaatttcaaggttttagtttt |
94 |
Q |
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| T |
45769697 |
atatacgaacatcattcaaattcaaggttttagtttt |
45769661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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