View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_18 (Length: 391)
Name: NF1420_low_18
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_18 |
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| [»] scaffold0116 (2 HSPs) |
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| [»] scaffold0933 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0116 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 4238 - 3868
Alignment:
| Q |
19 |
agagtcttcaagattttggaacttagaatctcttaatcttactgataaagagactgctcgaatctttccttgccaaatataagtgtgtactcgatccgat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
4238 |
agagtcttcaagattttggaacttagaatctcttaatcttactgataaagagactgctcgatactttccttgccaaatataagtgtgttctcgatccgat |
4139 |
T |
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| Q |
119 |
gcaggttcaaccatagcaaattgcaccaacccaatatgaagatactgatacttgcttcggtaagttctaatttcatctcttgatagcaaatatatatcat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4138 |
gcaggttcaaccatagcaaattgcaccaacccaatatgaagatattgatacttgcttcggtaagttctaatttcatctcttgatagcaaatatatatctt |
4039 |
T |
|
| Q |
219 |
tgcattcaggtagagaaagnnnnnnnnccactgtcataattttgtaaccttttctaaagttgaatcgagaaagcaatgtttgcttataaatgttacgggt |
318 |
Q |
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| T |
4038 |
tgcattcaggtagagaaagatttttttccactgtcataattttgtaaccttttctaaagttgaatcgagaaagcaatgtttgattataaatgttacgggt |
3939 |
T |
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| Q |
319 |
tggtatttttcttatgctaaggtctttgttgttatactggaaatgaacaatgctatatttcttctcactcg |
389 |
Q |
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| T |
3938 |
tggtatatttcttatgctaagttcgttgttgttatactggaaatgaacaatgctatatttctcctcactcg |
3868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 18810 - 18731
Alignment:
| Q |
131 |
atagcaaattgcaccaacccaatatgaagatactgatacttgcttcggtaagttctaatttcatctcttgatagcaaata |
210 |
Q |
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| T |
18810 |
atagaaaattgtaccaacccaatatgaagaaaattatagttacttctatgacttctaatgtcatctcttgatagcaaata |
18731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0933 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0933
Description:
Target: scaffold0933; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 3531 - 3237
Alignment:
| Q |
19 |
agagtcttcaagattttggaacttagaatctcttaatcttactgataaagagactgctcgaatctttccttgccaaatataagtgtgtactcgatccgat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |||||| | |||||||||| |
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| T |
3531 |
agagtcttcaagattttggaacttagaatctcttaatcttactgataaagagactgctcgattctttccttgaaaaatttgagtgtgaattcgatccgat |
3432 |
T |
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| Q |
119 |
gcaggttcaaccatagcaaattgcaccaacccaatatgaagatactgatacttgcttcggtaagttctaatttcatctcttgatagcaaatatatatcat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3431 |
gcaggttcaaccatagcaaattgcaccaacccaatatgaagatattgatacttgcttcggtaagttctaatttcatctcttgatggcaaatatatatcat |
3332 |
T |
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| Q |
219 |
tgcattcaggtagagaaagnnnnnnnnccactgtcataattttgtaaccttttctaaagttgaatcgagaaagcaatgtttgcttataaatgtta |
313 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3331 |
tgcattcaggtagagaaagatttttttccactgtcataattttgtaaccttttctaaagttgaatcgagaaagcaatgtttgcttataaatgtta |
3237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 37866 - 37803
Alignment:
| Q |
248 |
actgtcataattttgtaaccttttctaaagttgaatcgagaaagcaatgtttgcttataaatgt |
311 |
Q |
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||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
37866 |
actgttataattttgtaacctttcatgaagttgaatcgagaaagcaatgtttgcttataaatgt |
37803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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