View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_2 (Length: 607)
Name: NF1420_low_2
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 32282926 - 32283514
Alignment:
| Q |
1 |
aattcggactcggcatgttaaagttcattaatactccacaagtgttttatagactcttcgtaaattcaacatcatttgaattcttagatgttccaaggta |
100 |
Q |
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| T |
32282926 |
aattcggactcggcatgttaaagttcattaatactccacaagtgttttatagactcttcgtaaattcaacatcatttgaattcttagatgttccaaggta |
32283025 |
T |
|
| Q |
101 |
aaaatcctccaacggaaccttcaaggggtaaaccacggtcaatgtttatgtacttgaaattggttaaagaattctcacatgaaaaataacataaatgtag |
200 |
Q |
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| T |
32283026 |
aaaatcctccaacggaaccttcaaggggtgaaccacggtcaatgtt-atgtacttgaaattggtcaaagaattctcacatgaaaaataacataaatgtag |
32283124 |
T |
|
| Q |
201 |
ttacaactgttcaaggttaaatgtcatttt-gttgggaccacggttcaccattcggacaataattctatgtctaggttttgtagttttcacgtaaaaggt |
299 |
Q |
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| T |
32283125 |
ttacaacattacaaggttaaatgtcatttttgttgggaccacggttcaccattcggacaataattctatgtctaggttttgtagttttcacgtaaaaagt |
32283224 |
T |
|
| Q |
300 |
aatgaatttatgtgtatcatattatgctatcttcttatggtcaatatcttgcatcagtcgcatttttactcgttttccacgttataaagatcttcaaggt |
399 |
Q |
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| T |
32283225 |
aatgaatttatgtgtatcatattatgctatcttcttatggtcaatatcttgcatcagtcgcatttttactcgttttccacgttataaagatcttcaaggt |
32283324 |
T |
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| Q |
400 |
aactgcaacaacaatttaaaataaaaatgggtgcattgtgtaatcgaggggaccattgcatggctatataggaaatgcattacttcttacatcatgcatc |
499 |
Q |
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| T |
32283325 |
aactgcaacaacaatttaaaataaaaaagggtgcattgtgtaatcgcgggggccattgcatggctatataggaaatgcattacttcttacatcatgcatc |
32283424 |
T |
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| Q |
500 |
aagaagaaagaagcaaaagcatctttttgcgaattttccatttgtcgaatacataatgaaacatttgatattattggtgatcacgaaaat |
589 |
Q |
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| T |
32283425 |
aagaagaaagaagcaaaagcatctctttgcgaattttccatttgtcgaatacataatgaaacatttgatattattggtgatcacaaaaat |
32283514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 436 - 523
Target Start/End: Complemental strand, 25785891 - 25785800
Alignment:
| Q |
436 |
tgtgtaatcgaggggaccatt-gcatggctatataggaaatgcattacttcttacatcat---gcatcaagaagaaagaagcaaaagcatct |
523 |
Q |
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| T |
25785891 |
tgtgtaaacgaggggaccgtttgcatggctacagaggaagtgcattacttcatacatcatcaagcatcaagaagaaagaagaaaaagcatct |
25785800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 36879156 - 36879108
Alignment:
| Q |
81 |
ttcttagatgttccaaggtaaaaatcctccaacggaaccttcaaggggt |
129 |
Q |
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||||||||||| |||||||||| ||||||||| | ||||||||||||| |
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| T |
36879156 |
ttcttagatgtcccaaggtaaagatcctccaaagataccttcaaggggt |
36879108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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