View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_20 (Length: 370)
Name: NF1420_low_20
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 29284502 - 29284164
Alignment:
| Q |
18 |
tatttgacaccaaaatctaatgtggaagagtaatatatgcagaaattttgatcacaatctattgaaaagataggtatattatttttgtgaatgagtgaga |
117 |
Q |
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| T |
29284502 |
tatttgacaccaaaatctaatgtggaagagtaatatatgcagaaattttgatcataatctattgaatagataggtatattatttttgtcaatgagtgaga |
29284403 |
T |
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| Q |
118 |
gatatgccaccaaagatataatgcaaaaagataaaagcaaaactaaacaggttggtgcttttgtgtaaagtgtaaacctgaatgattatgggcaattatg |
217 |
Q |
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| T |
29284402 |
gatatgccaccaaagatataatgcaaaaagataaaagcaaaactaaacaggttggtgcttttgtgtaaagtgtaaacctgaatgattatgggcaattatg |
29284303 |
T |
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| Q |
218 |
agtgtatgaccttgacaactatcaggtgcctaccatgttgaaaaggctattgataatagggaagcatcatacaatggttgaaaaatctgtcactagaaag |
317 |
Q |
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| T |
29284302 |
agtgtacgaccttgacaactatcaggtgcctaccatgttgaaaaggctattgataatagggaagcatcatacaatggttgaaaaatctgtcactagaaag |
29284203 |
T |
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| Q |
318 |
tgcacttttacatatttgtacaaattaatatgtaaaagt |
356 |
Q |
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| T |
29284202 |
tgcacttttacatatttgtgcaaattaatatgtaaaagt |
29284164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 29289805 - 29289467
Alignment:
| Q |
18 |
tatttgacaccaaaatctaatgtggaagagtaatatatgcagaaattttgatcacaatctattgaaaagataggtatattatttttgtgaatgagtgaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
29289805 |
tatttgacaccaaaatctaatgtggaagagtaatatatgcagaaattttgatcataatctattgaatagataggtatattatttttgtcaatgagtgaga |
29289706 |
T |
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| Q |
118 |
gatatgccaccaaagatataatgcaaaaagataaaagcaaaactaaacaggttggtgcttttgtgtaaagtgtaaacctgaatgattatgggcaattatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29289705 |
gatatgccaccaaagatataatgcaaaaagataaaagcaaaactaaacaggttggtgcttttgtgtaaagtgtaaacctgaatgattatgggcaattatg |
29289606 |
T |
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| Q |
218 |
agtgtatgaccttgacaactatcaggtgcctaccatgttgaaaaggctattgataatagggaagcatcatacaatggttgaaaaatctgtcactagaaag |
317 |
Q |
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| T |
29289605 |
agtgtacgaccttgacaactatcaggtgcctaccatgttgaaaaggctattgataatagggaagcatcatacaatggttgaaaaatctgtcactagaaag |
29289506 |
T |
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| Q |
318 |
tgcacttttacatatttgtacaaattaatatgtaaaagt |
356 |
Q |
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| T |
29289505 |
tgcacttttacatatttgtgcaaattaatatgtaaaagt |
29289467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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