View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_21 (Length: 365)
Name: NF1420_low_21
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 22381707 - 22381912
Alignment:
| Q |
9 |
attattctgatcagcttctgaagctagcataccataaacaactacttgattaatagttggatgaaatataacagactccatgtccccaaaattcctagga |
108 |
Q |
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| T |
22381707 |
attattctaatcaacttcacaagctagcataccgtaaacaactacttgagtaatagttggatgaaacataacagactccatgtccccaaaattcctcgga |
22381806 |
T |
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| Q |
109 |
atttaagttcgaaacaaaaaattgaagtgttcttgcaaatcaagcattcaaggatataatatgcctatgttcatgaaaattatccacgggattaataact |
208 |
Q |
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| T |
22381807 |
atttaacttcgaaacaaaaattttaagtgttcttgcaaatcaagcatccaaggatataatatgcctatgtttatgaaaattatccacaggattaataact |
22381906 |
T |
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| Q |
209 |
catatt |
214 |
Q |
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|||||| |
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| T |
22381907 |
catatt |
22381912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 28382288 - 28382395
Alignment:
| Q |
250 |
cactagtagtggaaatttcctcgagtccaaccacaatctagtac--------actccaaaattgaaaaatattttcctcgtgtggtgttctcatttggta |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28382288 |
cactagtagtggaaatttcctcgagtccaaccacaatctagtacactccaaaactccaaaattgacaaatattttcctcgtgtggtgttctcatttggta |
28382387 |
T |
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| Q |
342 |
cttataaa |
349 |
Q |
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|||||||| |
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| T |
28382388 |
cttataaa |
28382395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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