View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_23 (Length: 328)
Name: NF1420_low_23
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 18439254 - 18438954
Alignment:
| Q |
19 |
cttcgacacatgttttgatatgctttccaatttcttgataagttcccgcgtgtcttcgacattttaatcatgcttcgtcatgaataatttgaattttcat |
118 |
Q |
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| T |
18439254 |
cttcgacacatattttgatatgctttccaatttcttgataagttcccgcgtgtcttcgacattt-aatcatgcttcgtcatgaataatttgaattttcat |
18439156 |
T |
|
| Q |
119 |
tgtcgaagctaataaaatttgcaacctctatgcca-----agtgcaaatataatatctcgaacttacaacttttctaacatgtggacaagttttaactcc |
213 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18439155 |
tgtcgaagctaataaactttgcaacctctatgccatgccaagtgcaaatataatatgtcgaacttacaacttttctaacatgtggacaagttttaactcc |
18439056 |
T |
|
| Q |
214 |
aacttggcacttttgtctttgtcgaatcatgtatatccaaaattcagtctaacaaattgcctcca-aaaatcccatttttctaagaaaaaatatgttgat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18439055 |
aacttggcacttttgtctttgtcgaatcatgtatatccaaaattcagtctaacaaattgcctccaaaaaatcccatttttctaagaaaaaatatgttgat |
18438956 |
T |
|
| Q |
313 |
gt |
314 |
Q |
| |
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|| |
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| T |
18438955 |
gt |
18438954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 18450112 - 18449812
Alignment:
| Q |
19 |
cttcgacacatgttttgatatgctttccaatttcttgataagttcccgcgtgtcttcgacattttaatcatgcttcgtcatgaataatttgaattttcat |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18450112 |
cttcgacacatattttgatatgctttccaatttcttgataagttcccgcgtgtcttcgacattt-aatcatgcttcgtcatgaataatttgaattttcat |
18450014 |
T |
|
| Q |
119 |
tgtcgaagctaataaaatttgcaacctctatgcca-----agtgcaaatataatatctcgaacttacaacttttctaacatgtggacaagttttaactcc |
213 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18450013 |
tgtcgaagctaataaactttgcaacctctatgccatgccaagtgcaaatataatatgtcgaacttacaacttttctaacatgtggacaagttttaactcc |
18449914 |
T |
|
| Q |
214 |
aacttggcacttttgtctttgtcgaatcatgtatatccaaaattcagtctaacaaattgcctcca-aaaatcccatttttctaagaaaaaatatgttgat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18449913 |
aacttggcacttttgtctttgtcgaatcatgtatatccaaaattcagtctaacaaattgcctccaaaaaatcccatttttctaagaaaaaatatgttgat |
18449814 |
T |
|
| Q |
313 |
gt |
314 |
Q |
| |
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|| |
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| T |
18449813 |
gt |
18449812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 18455205 - 18454905
Alignment:
| Q |
19 |
cttcgacacatgttttgatatgctttccaatttcttgataagttcccgcgtgtcttcgacattttaatcatgcttcgtcatgaataatttgaattttcat |
118 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18455205 |
cttcgacacatattttgatatgctttccaatttcttgataagttcccgcgtgtcttcgacattt-aatcatgcttcgtcatgaataatttgaattttcat |
18455107 |
T |
|
| Q |
119 |
tgtcgaagctaataaaatttgcaacctctatgcca-----agtgcaaatataatatctcgaacttacaacttttctaacatgtggacaagttttaactcc |
213 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18455106 |
tgtcgaagctaataaactttgcaacctctatgccatgccaagtgcaaatataatatgtcgaacttacaacttttctaacatgtggacaagttttaactcc |
18455007 |
T |
|
| Q |
214 |
aacttggcacttttgtctttgtcgaatcatgtatatccaaaattcagtctaacaaattgcctcca-aaaatcccatttttctaagaaaaaatatgttgat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18455006 |
aacttggcacttttgtctttgtcgaatcatgtatatccaaaattcagtctaacaaattgcctccaaaaaatcccatttttctaagaaaaaatatgttgat |
18454907 |
T |
|
| Q |
313 |
gt |
314 |
Q |
| |
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|| |
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|
| T |
18454906 |
gt |
18454905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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