View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_25 (Length: 309)
Name: NF1420_low_25
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 37042731 - 37043024
Alignment:
| Q |
1 |
aacttttaaaattatttgtttacatggaaatccatcgccttacaagnnnnnnnnn--cttcatttatgggtaaagtattttagttgatgtatttaaatat |
98 |
Q |
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| T |
37042731 |
aacttttaaaattatttgtttacatggaaatccatcgccttacaagattttttttttcttcatttatgggtaaagtattttaattgatgtatttaaatat |
37042830 |
T |
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| Q |
99 |
tttaaactgttttctctccaatttgttttccaatatcggagggggaatcaaacttgagtgagaaagaatttgaaatgaatattttatttatataaaacac |
198 |
Q |
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| T |
37042831 |
tttaaactgttttctctccaatttgttttccaatatcggagggggaatcaaacttgagtgaggaagaatttgaaatgaatattttatttatataaaacac |
37042930 |
T |
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| Q |
199 |
actaccatagagtgaccaattttattttttcacctctaattttcaacattgttccaatctttctagtagtgactttacgatctagtttcctaat |
292 |
Q |
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| T |
37042931 |
actagcatagagtgaccatttttattttttcacctctaattttcaacattgttccgatttttctagtagtgactttacgatctagtttcctaat |
37043024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 37030217 - 37030320
Alignment:
| Q |
57 |
ttcatttatgggtaaagtattttagttgatgtatttaaatattttaaactgttttctctccaatttgttttccaatatcggagggggaatcaaacttgag |
156 |
Q |
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| T |
37030217 |
ttcatatatgggtaaagtattttagttgatgtgtttaaatattttaaattgttttctct--aatttgtttttcaatattggaggggaaatcaaacttgag |
37030314 |
T |
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| Q |
157 |
tgagaa |
162 |
Q |
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|||||| |
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| T |
37030315 |
tgagaa |
37030320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 37030850 - 37030924
Alignment:
| Q |
218 |
ttttattttttcacctctaattttcaacattgttccaatctttctagtagtgactttacgatctagtttcctaat |
292 |
Q |
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|||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| |||||| |
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| T |
37030850 |
ttttattttttcacctctaattttcaacattgtttccatgtttctagtagtgactttacgatctagttccctaat |
37030924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 37020601 - 37020645
Alignment:
| Q |
82 |
ttgatgtatttaaatattttaaactgttttctctccaatttgttt |
126 |
Q |
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| T |
37020601 |
ttgatggatttaaatattttaattttttttctctccaatttgttt |
37020645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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