View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_29 (Length: 289)
Name: NF1420_low_29
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 6328669 - 6328400
Alignment:
| Q |
1 |
ttccaacgtccatgctgataagatcctcagccgtcctgcatgcaacggctataggacctgtcgtggacgttggaatatgggctatgcaatcaaaattgtt |
100 |
Q |
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| T |
6328669 |
ttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacgttggaatatgggctatgcaatcaaaattgtt |
6328570 |
T |
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| Q |
101 |
acaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
200 |
Q |
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| T |
6328569 |
acaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
6328470 |
T |
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| Q |
201 |
ataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatg |
270 |
Q |
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| T |
6328469 |
ataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatg |
6328400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 6336227 - 6335958
Alignment:
| Q |
1 |
ttccaacgtccatgctgataagatcctcagccgtcctgcatgcaacggctataggacctgtcgtggacgttggaatatgggctatgcaatcaaaattgtt |
100 |
Q |
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| T |
6336227 |
ttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtcgtggacgttggaatatgggctatgcaatcaaaattgtt |
6336128 |
T |
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| Q |
101 |
acaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
200 |
Q |
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| T |
6336127 |
acaaacgggaatcttgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
6336028 |
T |
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| Q |
201 |
ataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatg |
270 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336027 |
ataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatg |
6335958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 6351212 - 6350943
Alignment:
| Q |
1 |
ttccaacgtccatgctgataagatcctcagccgtcctgcatgcaacggctataggacctgtcgtggacgttggaatatgggctatgcaatcaaaattgtt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6351212 |
ttccaacgtccacgctgataagatcctcagccgttctgcatgcaacggctataggacctgtagtggacgttggaatatgggctatgcaatcaaaattgtt |
6351113 |
T |
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| Q |
101 |
acaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351112 |
acaaacgggaatattgaaagatgcagttatggcagttacaaagagaacattctatgaacatttttgtgctggagaagatgctattactgctggaaagagt |
6351013 |
T |
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| Q |
201 |
ataagggctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatg |
270 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351012 |
ataaggtctgttaatgaagctggcttacgtggcatgcttgtttttggtgttgaagatgcacatgagaatg |
6350943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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