View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_33 (Length: 277)
Name: NF1420_low_33
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_33 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 6328925 - 6328663
Alignment:
| Q |
15 |
aagaagaaaaacaacgtcaaagaaatcaaaaacatcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6328925 |
aagaagaaaaacaacgtcaaagaaatcaaaaacatcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtt |
6328826 |
T |
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| Q |
115 |
tcaaaaccaccacaaaaccattaaactcctcccatccttcagccaccgccaccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtc |
214 |
Q |
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| T |
6328825 |
tcaaaaccaccacaaaaccattaaactcctaccatccttcagccaccgccaccgtcgcctccattctcgaaagagaacaaccttctccaccacaaccgtc |
6328726 |
T |
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| Q |
215 |
acaccaacaaccatcttatcttgacctaaacgacggtgagagattattctcagctgttccaac |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6328725 |
acaccaacaaccatcttatcttgacctaaacgacggtgagagattattctcagctgttccaac |
6328663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 49 - 277
Target Start/End: Complemental strand, 6351434 - 6351206
Alignment:
| Q |
49 |
tcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
148 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351434 |
tcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
6351335 |
T |
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| Q |
149 |
tccttcagccaccgccaccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaacgac |
248 |
Q |
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| T |
6351334 |
tccttcggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaacgac |
6351235 |
T |
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| Q |
249 |
ggtgagagattattctcagctgttccaac |
277 |
Q |
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| T |
6351234 |
ggtgagagattattctcagctgttccaac |
6351206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 49 - 277
Target Start/End: Complemental strand, 6336449 - 6336221
Alignment:
| Q |
49 |
tcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
148 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336449 |
tcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
6336350 |
T |
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| Q |
149 |
tccttcagccaccgccaccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaacgac |
248 |
Q |
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|||||| ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336349 |
tccttcggccaccgccgccgtcgcttcccttattgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaacgac |
6336250 |
T |
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| Q |
249 |
ggtgagagattattctcagctgttccaac |
277 |
Q |
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| T |
6336249 |
ggtgagagattattctcagctgttccaac |
6336221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 6336502 - 6336466
Alignment:
| Q |
15 |
aagaagaaaaacaacgtcaaagaaatcaaaaacatca |
51 |
Q |
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| T |
6336502 |
aagaagaaaaacaacgtcaaagaaatcaaaaacatca |
6336466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 6351487 - 6351451
Alignment:
| Q |
15 |
aagaagaaaaacaacgtcaaagaaatcaaaaacatca |
51 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
6351487 |
aagaagaaaaacaacgtcaaagaaatcaaaaacatca |
6351451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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