View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_35 (Length: 254)
Name: NF1420_low_35
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 10794269 - 10794505
Alignment:
| Q |
1 |
attcataatatatacttacttgaacgaaacaatcatgaaagtgaagcctgattagaaacgcaggcactcggggctcaatcttagtaaagttcctaatgat |
100 |
Q |
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| T |
10794269 |
attcataatatatacttacttgaacgaaacaatcatgaaagtgaagcctgattagaatcgcaggcattcggggctcaatcttagtaaagttcctaacgat |
10794368 |
T |
|
| Q |
101 |
ttcgcggacaatggaattaagatttggacaagttttgctataaaaggctggatcaagctgtgcatttgaacataaaggtaacactccaaacacaactgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10794369 |
ttcgcggacaatggaattaagatttggacaagttttgctataaaaggctggatcaagctgtgcatttgaacataaaggtaacactccaaacacaactgca |
10794468 |
T |
|
| Q |
201 |
atacaacacaaagaagttgctatgagacgaaaggagt |
237 |
Q |
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| T |
10794469 |
atacaacacaaaaaagttgctatgagacgaaaggagt |
10794505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 11145098 - 11144964
Alignment:
| Q |
79 |
tcttagtaaagttcctaatgatttcgcggacaatggaattaagatttggacaagttttgctataaaaggctggatcaagctgtgcatttgaacataaagg |
178 |
Q |
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|||||| || ||| || |||| ||| |||||||||||| ||| |||||||||||||||||||||||||| ||||| ||| |||||||| ||| ||||| |
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| T |
11145098 |
tcttagaaacgtttcttatgacttcccggacaatggaactaacatttggacaagttttgctataaaaggatggattaagttgtgcattggaagggaaagg |
11144999 |
T |
|
| Q |
179 |
taacactccaaacacaactgcaatacaacacaaag |
213 |
Q |
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| T |
11144998 |
taacactccaaacaaagccacaataaaacacaaag |
11144964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 11148349 - 11148244
Alignment:
| Q |
108 |
acaatggaattaagatttggacaagttttgctataaaaggctggatcaagctgtgcatttgaacataaaggtaacactccaaacacaactgcaatacaac |
207 |
Q |
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||||||||| ||| |||||||||||| || || ||||||| ||||||||| |||||||||||| | || |||||| |||||| |||||| ||||||| | |
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| T |
11148349 |
acaatggaactaacatttggacaagtgttcctgtaaaaggatggatcaagttgtgcatttgaagagaagggtaaccctccaagcacaaccacaatacagc |
11148250 |
T |
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| Q |
208 |
acaaag |
213 |
Q |
| |
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|||||| |
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| T |
11148249 |
acaaag |
11148244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 11117955 - 11117917
Alignment:
| Q |
11 |
tatacttacttgaacgaaacaatcatgaaagtgaagcct |
49 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
11117955 |
tatacatacttgaacgaaacaatcatgaaagtgaagcct |
11117917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 11109485 - 11109450
Alignment:
| Q |
17 |
tacttgaacgaaacaatcatgaaagtgaagcctgat |
52 |
Q |
| |
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| T |
11109485 |
tacttgaacgaaacaatcatgaaaatgaagcctgat |
11109450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 11198348 - 11198313
Alignment:
| Q |
14 |
acttacttgaacgaaacaatcatgaaagtgaagcct |
49 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
11198348 |
acttacttgaacaaaacaatcatgaaagtgaagcct |
11198313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 11109376 - 11109306
Alignment:
| Q |
126 |
ggacaagttttgctataaaaggctggatcaagctgtgcatttgaacataaaggtaacactccaaacacaac |
196 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| |||||||||||| | || |||| ||||||||||||| |
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| T |
11109376 |
ggacaagttttgccataaaagtatggatcaagttgtgcatttgaagagaagggtagtcctccaaacacaac |
11109306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 11148446 - 11148406
Alignment:
| Q |
11 |
tatacttacttgaacgaaacaatcatgaaagtgaagcctga |
51 |
Q |
| |
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||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
11148446 |
tatacatacttgaacaaaacagtcatgaaagtgaagcctga |
11148406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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