View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_36 (Length: 254)
Name: NF1420_low_36
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 11326848 - 11327074
Alignment:
| Q |
18 |
ttcatgagagaaatgtcctttaccttaggctaatcattgattctcttagattgcatatcgtaaaggtgtgaggaatcatagccatttaaatacaaagagc |
117 |
Q |
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| T |
11326848 |
ttcatgagagaaatgtcctttaccttaggttaatcattgattctcttagattgcatatcgtgaaggtttgaggaatcatagccatttaaatacaaagagc |
11326947 |
T |
|
| Q |
118 |
aactcaaatagaaaacacaataaaccatgagagtatttagtaagcatctttacctagaaaataagcaatcactaagtgctttctcctgcattataagcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11326948 |
aactcaaatagaaaacacaataaaccatgagagtatttagtaagcatctttacctagaaaataagcaatcactaagtgctttctcctgcattataagcca |
11327047 |
T |
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| Q |
218 |
ttcctgaaaattcgtaatcaagaataa |
244 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
11327048 |
ttcctgaaaattcctaatcaagaataa |
11327074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 11484869 - 11485095
Alignment:
| Q |
18 |
ttcatgagagaaatgtcctttaccttaggctaatcattgattctcttagattgcatatcgtaaaggtgtgaggaatcatagccatttaaatacaaagagc |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
11484869 |
ttcatgagagaaatgtcctttaccttaggttaatcattgattctcttagattgcatatcgtgaaggtttgaggaatcatagccatttaaatacaaagagc |
11484968 |
T |
|
| Q |
118 |
aactcaaatagaaaacacaataaaccatgagagtatttagtaagcatctttacctagaaaataagcaatcactaagtgctttctcctgcattataagcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11484969 |
aactcaaatagaaaacacaataaaccatgagagtatttagtaagcatctttacctagaaaataagcaatcactaagtgctttctcctgcattataagcca |
11485068 |
T |
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| Q |
218 |
ttcctgaaaattcgtaatcaagaataa |
244 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
11485069 |
ttcctgaaaattcctaatcaagaataa |
11485095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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