View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_38 (Length: 249)
Name: NF1420_low_38
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 54878175 - 54878418
Alignment:
| Q |
6 |
agaagcaaagggataagataagccaatatgaatcaaaccaacccttttatcccattttcagttttcttcatcttccatttccatcatcaccatggaagct |
105 |
Q |
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| T |
54878175 |
agaaacaaagggataagataagccaatatgaatcaaaccaacccttttatcccattttcagttttcttcatcttccatttccatcatcaccatggaagct |
54878274 |
T |
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| Q |
106 |
actgcaactctactcagcttctctcttccatccaccaaaacccaatcttttcaaatcctaacccgacccattaacccattcaacccacccacatcataca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54878275 |
actgcaactctactcagcttctctcttccatccaccaaaacccaatcttttcaaatcctaacccgacccattaacccattcaacccacccacatcataca |
54878374 |
T |
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| Q |
206 |
aacatagacccatttccaaaacccaccgtttatccatcaacgcc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54878375 |
aacatagacccatttccaaaacccaccgtttatccatcaacgcc |
54878418 |
T |
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