View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1420_low_4 (Length: 555)

Name: NF1420_low_4
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1420_low_4
NF1420_low_4
[»] chr3 (11 HSPs)
chr3 (36-541)||(27460051-27460556)
chr3 (359-541)||(27919130-27919312)
chr3 (267-541)||(11419667-11419941)
chr3 (293-541)||(28002879-28003122)
chr3 (293-476)||(28036129-28036309)
chr3 (30-149)||(27460239-27460358)
chr3 (405-472)||(27377207-27377274)
chr3 (356-448)||(27979254-27979346)
chr3 (418-467)||(17745693-17745742)
chr3 (418-467)||(19047013-19047062)
chr3 (238-267)||(49733616-49733645)
[»] chr2 (2 HSPs)
chr2 (371-541)||(8020389-8020556)
chr2 (405-472)||(22392139-22392206)
[»] chr4 (2 HSPs)
chr4 (356-448)||(18010557-18010649)
chr4 (238-266)||(24654147-24654175)
[»] chr1 (4 HSPs)
chr1 (238-267)||(42074250-42074279)
chr1 (238-266)||(883037-883065)
chr1 (238-270)||(4540612-4540644)
chr1 (238-266)||(24419650-24419678)


Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 36 - 541
Target Start/End: Complemental strand, 27460556 - 27460051
Alignment:
Q  36 cgcttataaatatgacgggagggagtgctataatgatgttaatcggtattgtacttttctatagattctaaattgtacggggatatgaggtagctattca 135  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27460556 cgcttatatatatgacgggagggagtgctataatgatgttaatcggtattgtacttttctatagattctaaattgtatggggatatgaggtagctattca 27460457  T
Q  136 accatttacgtgactgacgtcatgttcattaaataactgatacatctggactgtattatagtccaaatacgtaagttattcaatgaacctagcnnnnnnn 235  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||           
T  27460456 accatttacgtgactgacgtcatgttcattaaataactgatatatctggactgtattatagtccaaatacgtaagttattcaatgaacctagcaaaaaaa 27460357  T
Q  236 tatttgcttataaatgtgaccggaaggagtactataatgctgttaatcgctattgtacttttctatagattatcaattgtacgaggatttgtggaagcta 335  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||  ||||    
T  27460356 tatttgcttataaatgtgacccgaaggagtactataatgatgttaatcgctattgtacttttctatagattatgaattgtacatggatttgcggctgcta 27460257  T
Q  336 ttcaaccattttcgtgacatgtccaaaggccatggtacttgtaatgaatatccaagttcagaaatcaccgaagttgaagcaacatcaggacacaagttga 435  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27460256 ttcaaacattttcgtgacatgtccaaaggccatgatacttgtaatgaatatccaagttcagaaatcaccgaagttgaagcaacatcaggacacaagttga 27460157  T
Q  436 cttcttcgcaggtcaataccattctatttatttaagctaacaatatacaaatacaatcaccaacccaatctatttggatcaaacattttattttttgtgc 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27460156 cttcttcgcaggtcaataccattctatttatttaagctaacaatatacgaatacaatcatcaacccaatctatttggatcaaacattttattttttgtgc 27460057  T
Q  536 agaaag 541  Q
    ||||||    
T  27460056 agaaag 27460051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 359 - 541
Target Start/End: Original strand, 27919130 - 27919312
Alignment:
Q  359 caaaggccatggtacttgtaatgaatatccaagttcagaaatcaccgaagttgaagcaacatcaggacacaagttgacttcttcgcaggtcaataccatt 458  Q
    ||||||||| | ||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||  ||||||||||||| ||||||||| | |||    
T  27919130 caaaggccacgatacttgtaatgaatatccaagttcagaaatcactgaagttcaagcaacatctggacatcagttgacttcttcacaggtcaatcctatt 27919229  T
Q  459 ctatttatttaagctaacaatatacaaatacaatcaccaacccaatctatttggatcaaacattttattttttgtgcagaaag 541  Q
    |||||||||||| ||||| | |||  ||||||||||||||  |||| |||||| ||||||||||||||| |||||||||||||    
T  27919230 ctatttatttaacctaaccacatatgaatacaatcaccaatacaatgtatttgaatcaaacattttattctttgtgcagaaag 27919312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 267 - 541
Target Start/End: Original strand, 11419667 - 11419941
Alignment:
Q  267 ctataatgctgttaatcgctattgtacttttctatagattatcaattgtacgaggatttgtggaagctattcaaccattttcgtgacatgtccaaaggcc 366  Q
    ||||||||  |||||||||| | ||||||| ||||||||||| |||||||||| ||||||  |||||| ||||| || || |  |    | |||||||||    
T  11419667 ctataatgacgttaatcgctgtagtactttgctatagattatgaattgtacgacgatttgacgaagctgttcaagcaattacacggtgaggccaaaggcc 11419766  T
Q  367 atggtacttgtaatgaatatccaagttcagaaatcaccgaagttgaagcaacatcaggacacaagttgacttcttcgcaggtcaataccattctatttat 466  Q
    | | ||||| |||||||||||||||||||||||||||||||| |  || | ||||| ||||| ||  ||||||||| ||||||||||| |||||||||||    
T  11419767 acgatacttctaatgaatatccaagttcagaaatcaccgaagctcgagaagcatcaagacacgagccgacttcttcacaggtcaatactattctatttat 11419866  T
Q  467 ttaagctaacaatatacaaatacaatcaccaacccaatctatttggatcaaacattttattttttgtgcagaaag 541  Q
    | |||||||| |  ||  ||||||||||||||  |||| |||||| | |||| |  |||||||||||||||||||    
T  11419867 tcaagctaaccacctatgaatacaatcaccaatgcaatgtatttgaaacaaaaaaattattttttgtgcagaaag 11419941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 293 - 541
Target Start/End: Original strand, 28002879 - 28003122
Alignment:
Q  293 cttttctatagattatcaattgtacgaggatttgtggaagctattcaaccattttcgtgacatgtccaaaggccatggtacttgtaatgaatatccaagt 392  Q
    |||| ||||||||||| ||||||||| |||||||  ||| |||||||| || || | |||   |||||||||||| | ||||||||||||||||||||||    
T  28002879 ctttgctatagattatgaattgtacgtggatttgaagaatctattcaagcaattacatgatgagtccaaaggccacgatacttgtaatgaatatccaagt 28002978  T
Q  393 tcagaaatcaccgaagttgaagcaacatcaggacacaagttgacttcttcgcaggtcaataccattctatttatttaagctaacaatatacaaatacaat 492  Q
    ||||||||||| |||||| |||   |||| ||| || |||| |||||||| ||||||||||| |||||||||||| || ||||| | ||   || || ||    
T  28002979 tcagaaatcactgaagttcaag---catccggaaacgagtttacttcttcacaggtcaatactattctatttattcaatctaaccacat--gaaaactat 28003073  T
Q  493 caccaacccaatctatttggatcaaacattttattttttgtgcagaaag 541  Q
    | |||| |||||  ||||| |||||||||||||||||||||| ||||||    
T  28003074 cgccaatccaatgcatttgaatcaaacattttattttttgtgtagaaag 28003122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 293 - 476
Target Start/End: Original strand, 28036129 - 28036309
Alignment:
Q  293 cttttctatagattatcaattgtacgaggatttgtggaagctattcaaccattttcgtgacatgtccaaaggccatggtacttgtaatgaatatccaagt 392  Q
    |||| ||||||||||| ||||||||||||||||   ||| |||||||| || ||   |||   |||||||||||| | |||||||||||| |||||||||    
T  28036129 ctttgctatagattatgaattgtacgaggattttaagaatctattcaagcaattaaatgatgagtccaaaggccacgatacttgtaatgagtatccaagt 28036228  T
Q  393 tcagaaatcaccgaagttgaagcaacatcaggacacaagttgacttcttcgcaggtcaataccattctatttatttaagctaac 476  Q
    ||||||||||| |||||| |||   |||| ||| || |||| |||||||| ||||||||||| ||||||||||||||| |||||    
T  28036229 tcagaaatcactgaagttcaag---catccggaaacgagtttacttcttcacaggtcaatactattctatttatttaacctaac 28036309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 27460358 - 27460239
Alignment:
Q  30 aatattcgcttataaatatgacgggagggagtgctataatgatgttaatcggtattgtacttttctatagattctaaattgtacggggatatgaggtagc 129  Q
    |||||| |||||||||| ||||  || ||||| |||||||||||||||||| ||||||||||||||||||||| | ||||||||  |||| || ||  ||    
T  27460358 aatatttgcttataaatgtgacccgaaggagtactataatgatgttaatcgctattgtacttttctatagattatgaattgtacatggatttgcggctgc 27460259  T
Q  130 tattcaaccatttacgtgac 149  Q
    ||||||| ||||| ||||||    
T  27460258 tattcaaacattttcgtgac 27460239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 472
Target Start/End: Original strand, 27377207 - 27377274
Alignment:
Q  405 gaagttgaagcaacatcaggacacaagttgacttcttcgcaggtcaataccattctatttatttaagc 472  Q
    |||||||||| | |||||||||||| |||||||||||| ||||||||| |||||| ||||||| ||||    
T  27377207 gaagttgaagtagcatcaggacacatgttgacttcttcacaggtcaatcccattccatttattcaagc 27377274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 448
Target Start/End: Original strand, 27979254 - 27979346
Alignment:
Q  356 gtccaaaggccatggtacttgtaatgaatatccaagttcagaaatcaccgaagttgaagcaacatcaggacacaagttgacttcttcgcaggt 448  Q
    |||| ||||||| | ||||||||| ||| ||||||||||| | || || |||||| ||||| |||||| ||||||||||  |||||| |||||    
T  27979254 gtccgaaggccacgatacttgtaaggaacatccaagttcaaatattactgaagttcaagcagcatcagaacacaagttggtttcttcacaggt 27979346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 17745742 - 17745693
Alignment:
Q  418 catcaggacacaagttgacttcttcgcaggtcaataccattctatttatt 467  Q
    ||||| ||||||||||||||||||| ||||||| ||| | ||||||||||    
T  17745742 catcaagacacaagttgacttcttcacaggtcagtactactctatttatt 17745693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 19047062 - 19047013
Alignment:
Q  418 catcaggacacaagttgacttcttcgcaggtcaataccattctatttatt 467  Q
    ||||| ||||||||||||||||||| ||||||| ||| | ||||||||||    
T  19047062 catcaagacacaagttgacttcttcacaggtcagtactactctatttatt 19047013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 49733645 - 49733616
Alignment:
Q  238 tttgcttataaatgtgaccggaaggagtac 267  Q
    ||||||||||||||||||||||||||||||    
T  49733645 tttgcttataaatgtgaccggaaggagtac 49733616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 371 - 541
Target Start/End: Original strand, 8020389 - 8020556
Alignment:
Q  371 tacttgtaatgaatatccaagttcagaaatcaccgaagttgaagcaacatcaggacacaagttgacttcttcgcaggtcaataccattctatttatttaa 470  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||   || |||||| |||| |||||||| | ||||||||| |||||||||||| ||    
T  8020389 tactagtaatgaatatccaagttcagaaatcaccgaagttcaagca---tccggacacgagtttacttcttcacgggtcaatactattctatttattcaa 8020485  T
Q  471 gctaacaatatacaaatacaatcaccaacccaatctatttggatcaaacattttattttttgtgcagaaag 541  Q
    | |||| | |||  ||||||||||||||  |||| |||||| | ||||||||||||||||  |||||||||    
T  8020486 gttaaccacatatgaatacaatcaccaatacaatgtatttgaaacaaacattttatttttgatgcagaaag 8020556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 472
Target Start/End: Original strand, 22392139 - 22392206
Alignment:
Q  405 gaagttgaagcaacatcaggacacaagttgacttcttcgcaggtcaataccattctatttatttaagc 472  Q
    |||||||||| | |||||||||||| || ||||||||| ||||||||| |||||| ||||||| ||||    
T  22392139 gaagttgaagtagcatcaggacacatgtcgacttcttcacaggtcaatcccattcaatttattcaagc 22392206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 448
Target Start/End: Original strand, 18010557 - 18010649
Alignment:
Q  356 gtccaaaggccatggtacttgtaatgaatatccaagttcagaaatcaccgaagttgaagcaacatcaggacacaagttgacttcttcgcaggt 448  Q
    |||| ||||||| | ||||||||| ||| ||||||||||| | || || |||||| ||||| |||||| ||||||||||  |||||| |||||    
T  18010557 gtccgaaggccacgatacttgtaaggaacatccaagttcaaatattactgaagttcaagcagcatcagaacacaagttggtttcttcacaggt 18010649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 24654175 - 24654147
Alignment:
Q  238 tttgcttataaatgtgaccggaaggagta 266  Q
    |||||||||||||||||||||||||||||    
T  24654175 tttgcttataaatgtgaccggaaggagta 24654147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 42074250 - 42074279
Alignment:
Q  238 tttgcttataaatgtgaccggaaggagtac 267  Q
    ||||||||||||||||||||||||||||||    
T  42074250 tttgcttataaatgtgaccggaaggagtac 42074279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 883037 - 883065
Alignment:
Q  238 tttgcttataaatgtgaccggaaggagta 266  Q
    |||||||||||||||||||||||||||||    
T  883037 tttgcttataaatgtgaccggaaggagta 883065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 4540644 - 4540612
Alignment:
Q  238 tttgcttataaatgtgaccggaaggagtactat 270  Q
    |||||||||||||||||||||| ||||||||||    
T  4540644 tttgcttataaatgtgaccggagggagtactat 4540612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 24419650 - 24419678
Alignment:
Q  238 tttgcttataaatgtgaccggaaggagta 266  Q
    |||||||||||||||||||||||||||||    
T  24419650 tttgcttataaatgtgaccggaaggagta 24419678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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