View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_40 (Length: 238)
Name: NF1420_low_40
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_40 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36301 - 36538
Alignment:
| Q |
1 |
aaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttgggcaatgttcatttcatatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| | |
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| T |
36301 |
aaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttatgttggttgtattttgggcaatgttcatttcatatat |
36400 |
T |
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| Q |
101 |
gaagatgtagtgtaatgactcggttcaaatgttaaatcaatgttatgaagtttatgacattgttgattgtaatgaaaagaagttgtgtttcttgaatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36401 |
gaagatgtagtgtaatgactcggttcaaatgttaaatcaatgttatgaagtttatgacattgttgattgtaatgaaaagaagttgtgtttcttgaatcaa |
36500 |
T |
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| Q |
201 |
tgaaatgaagtttgtttgtcatgctattgttgtctgct |
238 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
36501 |
tgaaatgaagtttgtttgtcatgctattgttgtatgct |
36538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 23573608 - 23573754
Alignment:
| Q |
1 |
aaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttgggcaatgttcatttcatatct |
100 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
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| T |
23573608 |
aaaatgacaagttaaagaagaaactccaatactcaagaaagaaggcaaatttgtttatgtttacattggttgtatcttgggcaatgttcattacatatct |
23573707 |
T |
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| Q |
101 |
gaagatgtagtgtaatgactcggttcaaatgttaaatcaatgttatgaa |
149 |
Q |
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| T |
23573708 |
gacgatgtagtgtgat--ctcggttcaaatgttaaatcaatgttatgaa |
23573754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 31815022 - 31814943
Alignment:
| Q |
1 |
aaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttgg |
80 |
Q |
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|||| |||||||| ||||||||||| ||| | ||||| |||||| | || |||||||||||||||||| |||| |||||| |
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| T |
31815022 |
aaaacgagaagttgaagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
31814943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 13507544 - 13507611
Alignment:
| Q |
1 |
aaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttg |
68 |
Q |
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|||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |
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| T |
13507544 |
aaaacgagaagttaaagaagaagctctaatactcaaggaagaatgcaaatttgtttatggttttgttg |
13507611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 13507705 - 13507638
Alignment:
| Q |
1 |
aaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttg |
68 |
Q |
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|||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
13507705 |
aaaacgagaagctaaagaagaagctccaatactcaaggaagaaggcaaatttgtttatgattttgttg |
13507638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7799467 - 7799387
Alignment:
| Q |
1 |
aaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttggg |
81 |
Q |
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||||||||||||| ||||||||||| ||| | ||||| |||||| | || |||||||||||||||||| |||| ||||||| |
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| T |
7799467 |
aaaatgagaagttgaagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
7799387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 19398568 - 19398488
Alignment:
| Q |
1 |
aaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttggg |
81 |
Q |
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|||||||||| || ||||||||||| ||| | ||||| |||||| | || |||||||||||||||||| |||| ||||||| |
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| T |
19398568 |
aaaatgagaatttgaagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
19398488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3509 - 3429
Alignment:
| Q |
1 |
aaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttggg |
81 |
Q |
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|||| |||||||| ||||||||||| ||| | ||||| |||||| | || |||||||||||||||||| |||| ||||||| |
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| T |
3509 |
aaaacgagaagttgaagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
3429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 22059415 - 22059336
Alignment:
| Q |
1 |
aaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttgg |
80 |
Q |
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|||| |||||||| ||||||||||| ||| | ||||| |||||| | || |||||||||||||||||| |||| |||||| |
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| T |
22059415 |
aaaacgagaagttgaagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
22059336 |
T |
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