View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1420_low_44 (Length: 222)

Name: NF1420_low_44
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1420_low_44
NF1420_low_44
[»] chr4 (10 HSPs)
chr4 (14-201)||(4890965-4891149)
chr4 (103-183)||(26393033-26393113)
chr4 (103-183)||(56000417-56000497)
chr4 (103-183)||(3533514-3533594)
chr4 (115-183)||(29663772-29663840)
chr4 (101-191)||(6348279-6348369)
chr4 (101-191)||(13533163-13533252)
chr4 (126-191)||(34438528-34438593)
chr4 (150-194)||(12095436-12095480)
chr4 (68-128)||(49896452-49896512)
[»] chr3 (6 HSPs)
chr3 (12-201)||(14858865-14859053)
chr3 (103-183)||(21128055-21128135)
chr3 (115-183)||(43346365-43346433)
chr3 (115-183)||(48254807-48254875)
chr3 (101-173)||(21074181-21074253)
chr3 (110-191)||(5123257-5123337)
[»] chr1 (6 HSPs)
chr1 (67-201)||(5804831-5804965)
chr1 (77-191)||(16757401-16757515)
chr1 (136-191)||(51726783-51726838)
chr1 (126-191)||(19466134-19466199)
chr1 (136-188)||(21277119-21277171)
chr1 (101-161)||(40811404-40811464)
[»] chr8 (10 HSPs)
chr8 (62-201)||(36179588-36179726)
chr8 (103-183)||(24069352-24069432)
chr8 (103-183)||(7770804-7770884)
chr8 (103-183)||(7796714-7796794)
chr8 (103-183)||(7815995-7816075)
chr8 (101-191)||(13366954-13367044)
chr8 (103-183)||(39515329-39515409)
chr8 (103-183)||(34617101-34617181)
chr8 (137-191)||(44606261-44606315)
chr8 (136-188)||(36070303-36070355)
[»] chr2 (5 HSPs)
chr2 (99-201)||(11130020-11130122)
chr2 (101-191)||(14509331-14509421)
chr2 (136-191)||(37868979-37869034)
chr2 (11-97)||(11130137-11130222)
chr2 (110-183)||(15850573-15850645)
[»] chr5 (4 HSPs)
chr5 (103-183)||(15856663-15856743)
chr5 (140-190)||(22165106-22165156)
chr5 (101-191)||(2167419-2167509)
chr5 (99-173)||(27705214-27705288)
[»] chr7 (3 HSPs)
chr7 (115-183)||(45719745-45719813)
chr7 (101-191)||(9662139-9662228)
chr7 (110-183)||(35484224-35484296)
[»] chr6 (3 HSPs)
chr6 (136-191)||(293579-293634)
chr6 (136-191)||(14328713-14328768)
chr6 (136-191)||(14421723-14421778)
[»] scaffold0122 (1 HSPs)
scaffold0122 (101-191)||(16067-16157)
[»] scaffold0018 (1 HSPs)
scaffold0018 (138-167)||(151998-152027)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 4891149 - 4890965
Alignment:
Q  14 atgaagaaaggtagtagataaattaagtgttggtgacacaccgttacaatcttgtagacatgtatgatctaatggttgtttttccataaaaaataccaaa 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  4891149 atgaagaaaggtagcagataaattaagtgttggtgacacaccgttacaatcttgtagacatgtatgatctaat---tgtttttccataaaaaataccaaa 4891053  T
Q  114 cggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaacccctaaaca 201  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  4891052 cggttgagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatgtggggttaacccctaaaca 4890965  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 26393033 - 26393113
Alignment:
Q  103 aaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| |||| |||||| ||||||||  ||| |||||||| |||||||||||||||||||||||  ||||| ||||||||    
T  26393033 aaaatatcaaatggttaaaattaaaaaacttagtaaggtctatggtggaccacctataatgttggttcaccttagacattt 26393113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 56000497 - 56000417
Alignment:
Q  103 aaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| |||| |||||| ||||||||  ||| ||||||||  |||||||||||||||||||||| |||||| ||||||||    
T  56000497 aaaatatcaaatggttaaaattaaaaaacttagtaaggtctacggtggaccacctataatgttggtccaccttagacattt 56000417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 3533514 - 3533594
Alignment:
Q  103 aaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| |||| |||||| ||||||||  ||| |||||||| ||||||||| ||||||||||||| | |||| ||||||||    
T  3533514 aaaatatcaaatggttaaaattaaaaaacttagtaaggtctatggtggaccgcctataatgttggtcgaccttagacattt 3533594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 29663840 - 29663772
Alignment:
Q  115 ggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| ||||||||| ||| |||||| | |||||||||||||||||||||||  ||||| ||||||||    
T  29663840 ggttaaaattaaaaatcttagtaaggtttatggtggaccacctataatgttggttcaccttagacattt 29663772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 6348369 - 6348279
Alignment:
Q  101 aaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||| | |||| |||||| |||| |||||||| ||||||||  ||||||||||   ||| ||||| |||||  ||||||||||||||||    
T  6348369 aaaaaagatcaaagggttaaaattagaaatattaataaggtctacggtggaccactcttaaggttggtccaccatagacatttgaggttaa 6348279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 13533163 - 13533252
Alignment:
Q  101 aaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||| | |||| |||||| ||| |||| |||| |||||||| |||||||| | |||||||||||| |||||  |||||||||| |||||    
T  13533163 aaaaaagatcaaatggttaaaattgaaaa-attaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagttaa 13533252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 34438593 - 34438528
Alignment:
Q  126 aaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||| |||| |||||||| |||||||| | |||||||||| | |||||  ||||||||||||||||    
T  34438593 aaaaaattaataaggtctatggtggactatctataatgttagtccaccatagacatttgaggttaa 34438528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 12095480 - 12095436
Alignment:
Q  150 gaccacctataatgttggcccacctgagacatttgaggttaaccc 194  Q
    |||||||||||||||||| |||| | |||||||||| ||||||||    
T  12095480 gaccacctataatgttggtccactttagacatttgatgttaaccc 12095436  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 49896452 - 49896512
Alignment:
Q  68 tagacatgtatgatctaatggttgtttttccataaaaaataccaaacggttaagattaaaa 128  Q
    |||||||| |||||||||||||| | |||  |||||||||| ||||||||| | |||||||    
T  49896452 tagacatgcatgatctaatggttctcttttaataaaaaatatcaaacggtttaaattaaaa 49896512  T

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Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 14858865 - 14859053
Alignment:
Q  12 agatgaagaaaggtagtagataaattaagtgttggtgacacaccgttacaatcttgtagacatgtatgatctaatggttgtttttccataaaaaatacca 111  Q
    |||| |||||| ||||||||||||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  14858865 agataaagaaatgtagtagataaattaagtgttggtgacacattgttaga-tcttgtagacatgtatgatctaatggttgtttttccgtaaaaaatatca 14858963  T
Q  112 aacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaacccctaaaca 201  Q
    ||||||| ||||||||||||||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  14858964 aacggttgagattaaaaatattacttaggcctttggtggatcacctataatattggcccacctgagacatttggggttaaccccttaaca 14859053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 21128135 - 21128055
Alignment:
Q  103 aaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| |||| |||||| ||||||||  ||  |||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  21128135 aaaatatcaaatggttaaaattaaaaaactttgtaaggtctatggtggaccacctataatgttggtccaccttagacattt 21128055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 43346365 - 43346433
Alignment:
Q  115 ggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| ||||||||  ||| |||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  43346365 ggttaaaattaaaaaatttagtaaggtctatggtggaccacctataatgttggtccaccttagacattt 43346433  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 48254807 - 48254875
Alignment:
Q  115 ggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| ||||||||  ||| |||||| | ||||||||||||||||||||||| |||||| ||||||||    
T  48254807 ggttaaaattaaaaaacttagtaaggtttatggtggaccacctataatgttggtccaccttagacattt 48254875  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 21074181 - 21074253
Alignment:
Q  101 aaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacc 173  Q
    |||||||| |||| |||||| ||| |||| |||| |||||||| |||||||| | |||||||||||| |||||    
T  21074181 aaaaaatatcaaagggttaaaattgaaaaaattaataaggtctatggtggactatctataatgttggtccacc 21074253  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 5123257 - 5123337
Alignment:
Q  110 caaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||| |||||| |||||||| |||| |||||||| |||| |||||| || |||||||| ||| || | ||||||||||||||    
T  5123257 caaatggttaaaattaaaaa-attaataaggtctatggtagaccacatacaatgttggtccatcttaaacatttgaggttaa 5123337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 5804965 - 5804831
Alignment:
Q  67 gtagacatgtatgatctaatggttgtttttccataaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttg 166  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||      
T  5804965 gtagacatgtatgatctaatggttgtttttcaataaaaaatatcaaacggttgagattaaaagtattactaaggtctttggtggaccacctataatgtga 5804866  T
Q  167 gcccacctgagacatttgaggttaacccctaaaca 201  Q
    || ||| ||||||||||| ||||||||||| ||||    
T  5804865 gctcacgtgagacatttggggttaaccccttaaca 5804831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 16757401 - 16757515
Alignment:
Q  77 atgatctaatggttgtttttccataaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctga 176  Q
    |||||||||||||||| ||| || |||||||| ||||| ||| | | |||  |  ||| |||||||| || |||||||| ||||||||||| ||| || |    
T  16757401 atgatctaatggttgtattttcagaaaaaatatcaaacagtttaaactaagcaatttaataaggtctatgatggaccacttataatgttggtccatctta 16757500  T
Q  177 gacatttgaggttaa 191  Q
    |||||||| ||||||    
T  16757501 gacatttgtggttaa 16757515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 51726783 - 51726838
Alignment:
Q  136 taaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||||| ||||||||||||||||| |||||  ||||| |||||||| |||||||    
T  51726783 taaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaa 51726838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 19466134 - 19466199
Alignment:
Q  126 aaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||| |||| |||||||| |||||||| | |||||||||| | |||||  ||||||||||||||||    
T  19466134 aaaaaattaataaggtctatggtggactatctataatgttagtccaccatagacatttgaggttaa 19466199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 21277171 - 21277119
Alignment:
Q  136 taaggtctttggtggaccacctataatgttggcccacctgagacatttgaggt 188  Q
    |||||||| ||||||||||||||||| |||||  ||||| |||||||| ||||    
T  21277171 taaggtctatggtggaccacctataaagttggttcaccttagacatttaaggt 21277119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 40811464 - 40811404
Alignment:
Q  101 aaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataa 161  Q
    |||||||| ||||||||||| | |||||   ||| |||||||| |||||||||||||||||    
T  40811464 aaaaaatatcaaacggttaaaaataaaagatttaataaggtctatggtggaccacctataa 40811404  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 36179726 - 36179588
Alignment:
Q  62 atcttgtagacatgtatgatctaatggttgtttttccataaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataa 161  Q
    |||| ||||||||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  36179726 atctcgtagacatgtacgatctaatggttgtttttc-ataaaaaatatcaaacggttgagattaaaagtattactaaagtctttggtggaccacctataa 36179628  T
Q  162 tgttggcccacctgagacatttgaggttaacccctaaaca 201  Q
    |||  |||||||||||||||||| ||||||| ||| ||||    
T  36179627 tgtgagcccacctgagacatttggggttaactccttaaca 36179588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 24069352 - 24069432
Alignment:
Q  103 aaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| |||| |||||| ||||||||  ||| |||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  24069352 aaaatatcaaatggttaaaattaaaaaacttagtaaggtctatggtggaccacctataatgttggtccaccttagacattt 24069432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 7770804 - 7770884
Alignment:
Q  103 aaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| |||| |||||| ||||||||  ||| |||||||| ||| ||||||||||||||||||| |||||| ||||||||    
T  7770804 aaaatatcaaatggttaaaattaaaaaacttagtaaggtctatggaggaccacctataatgttggtccaccttagacattt 7770884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 7796714 - 7796794
Alignment:
Q  103 aaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| |||| |||||| ||||||||  ||| |||||||| ||| ||||||||||||||||||| |||||| ||||||||    
T  7796714 aaaatatcaaatggttaaaattaaaaaacttagtaaggtctatggaggaccacctataatgttggtccaccttagacattt 7796794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 7815995 - 7816075
Alignment:
Q  103 aaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| |||| |||||| ||||||||  ||| |||||||| ||| ||||||||||||||||||| |||||| ||||||||    
T  7815995 aaaatatcaaatggttaaaattaaaaaacttagtaaggtctatggaggaccacctataatgttggtccaccttagacattt 7816075  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 13366954 - 13367044
Alignment:
Q  101 aaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||||| ||||||||||| | |||||   ||| |||||||| ||||||||||||||||| |||||  ||||| |||||||| |||||||    
T  13366954 aaaaaatatcaaacggttaaaaataaaaggtttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaa 13367044  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 39515409 - 39515329
Alignment:
Q  103 aaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| |||| |||||| |||| |||  ||| |||||||| || |||||||||||||||||||| |||||| ||||||||    
T  39515409 aaaatatcaaatggttaaaattataaaacttagtaaggtctatgatggaccacctataatgttggtccaccttagacattt 39515329  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 34617101 - 34617181
Alignment:
Q  103 aaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| |||| |||||| ||||||||  ||| ||||||||  |||||||||||| ||||||||| |||||| | ||||||    
T  34617101 aaaatatcaaatggttaaaattaaaaaatttagtaaggtctacggtggaccacctgtaatgttggtccaccttatacattt 34617181  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 44606315 - 44606261
Alignment:
Q  137 aaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    ||||||| ||||||||||||||||| |||||  ||||| |||||||| |||||||    
T  44606315 aaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaa 44606261  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 36070355 - 36070303
Alignment:
Q  136 taaggtctttggtggaccacctataatgttggcccacctgagacatttgaggt 188  Q
    |||||||| ||||||||||||||||| |||||  ||||| |||||||| ||||    
T  36070355 taaggtctatggtggaccacctataaagttggttcaccttagacatttaaggt 36070303  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 201
Target Start/End: Complemental strand, 11130122 - 11130020
Alignment:
Q  99 ataaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaacccctaa 198  Q
    |||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||  | ||||| |||||||||| ||||||||||| |    
T  11130122 ataaaaaatatcaaacgattaaggttaaaagtattactaaggtctttggtggaccacctataatgtgagtccaccagagacatttggggttaacccctca 11130023  T
Q  199 aca 201  Q
    |||    
T  11130022 aca 11130020  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 14509421 - 14509331
Alignment:
Q  101 aaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||||| ||||||||||| | |||||   ||| |||||||| ||||||||||||||||| |||||   |||| |||||||| |||||||    
T  14509421 aaaaaatatcaaacggttaaaaataaaaggtttaataaggtctatggtggaccacctataaagttggtttaccttagacatttaaggttaa 14509331  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 37868979 - 37869034
Alignment:
Q  136 taaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||||| | ||||||||||||||| |||||| ||||| |||||||| |||||||    
T  37868979 taaggtctattgtggaccacctataaagttggctcaccttagacatttaaggttaa 37869034  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 11130222 - 11130137
Alignment:
Q  11 gagatgaagaaaggtagtagataaattaagtgttggtgacacaccgttacaatcttgtagacatgtatgatctaatggttgtttttc 97  Q
    ||||||||||||| ||  | ||||||||||||||||||  | |  |||| | ||| ||||||||||||||| |||||||||||||||    
T  11130222 gagatgaagaaagctaaaaaataaattaagtgttggtggtatatagttaga-tctcgtagacatgtatgatttaatggttgtttttc 11130137  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 15850573 - 15850645
Alignment:
Q  110 caaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||| |||||| ||||||||| | | |||| ||| |||||||||||||||||||||||  ||||| ||||||||    
T  15850573 caaagggttaaaattaaaaatct-attaagatctatggtggaccacctataatgttggttcaccttagacattt 15850645  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 15856743 - 15856663
Alignment:
Q  103 aaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| |||| | |||| ||||||||  ||| |||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  15856743 aaaatatcaaatgattaaaattaaaaaacttagtaaggtctatggtggaccacctataatgttggtccaccttagacattt 15856663  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 22165156 - 22165106
Alignment:
Q  140 gtctttggtggaccacctataatgttggcccacctgagacatttgaggtta 190  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  22165156 gtctttggtggaccacctataatgttggtccaccaaagacatttgaggtta 22165106  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 2167419 - 2167509
Alignment:
Q  101 aaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||| | ||||||||||| | |||||   ||| |||||||| |||||||||| |||||| |||||  ||||| |||||||| |||||||    
T  2167419 aaaaaaaatcaaacggttaataataaaagatttaataaggtctatggtggaccatctataaagttggttcaccttagacatttaaggttaa 2167509  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 27705214 - 27705288
Alignment:
Q  99 ataaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacc 173  Q
    |||||||||| ||||||||| | ||||||||||||| || | ||| ||||||||||| | ||| ||||| |||||    
T  27705214 ataaaaaatatcaaacggtttaaattaaaaatattaataggatctatggtggaccacttttaaggttggtccacc 27705288  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 45719813 - 45719745
Alignment:
Q  115 ggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||||| ||||||||  ||| |||||| | ||||||| ||||||||||||||| |||||| ||||||||    
T  45719813 ggttaaaattaaaaaacttagtaaggtttatggtggagcacctataatgttggtccaccttagacattt 45719745  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 9662139 - 9662228
Alignment:
Q  101 aaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||| | |||| |||||| ||| |||| |||| |||||||| |||||||| | |||||||||||| |||||  |||||||||| |||||    
T  9662139 aaaaaagatcaaatggttaaaattgaaaa-attaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagttaa 9662228  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 35484224 - 35484296
Alignment:
Q  110 caaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacattt 183  Q
    |||| |||||| ||||||||| | | |||| ||| |||||||||||||||||||||||  ||||| ||||||||    
T  35484224 caaagggttaaaattaaaaatct-attaagatctatggtggaccacctataatgttggttcaccttagacattt 35484296  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 293579 - 293634
Alignment:
Q  136 taaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||||| ||||||||||||||||| |||||  ||||| |||||||| |||||||    
T  293579 taaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaa 293634  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 14328713 - 14328768
Alignment:
Q  136 taaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||||| ||||||||||||||||| |||||  ||||| |||||||| |||||||    
T  14328713 taaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaa 14328768  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 14421723 - 14421778
Alignment:
Q  136 taaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||||| ||||||||||||||||| |||||  ||||| |||||||| |||||||    
T  14421723 taaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaa 14421778  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 16157 - 16067
Alignment:
Q  101 aaaaaataccaaacggttaagattaaaaatattactaaggtctttggtggaccacctataatgttggcccacctgagacatttgaggttaa 191  Q
    |||||||| ||||||||||| | |||||   ||| |||||||| |||||||||| |||||| |||||  || || |||||||| |||||||    
T  16157 aaaaaatatcaaacggttaaaaataaaaggtttaataaggtctatggtggaccatctataaagttggttcatcttagacatttaaggttaa 16067  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 151998 - 152027
Alignment:
Q  138 aggtctttggtggaccacctataatgttgg 167  Q
    ||||||||||||||||||||||||||||||    
T  151998 aggtctttggtggaccacctataatgttgg 152027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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