View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1420_low_6 (Length: 538)
Name: NF1420_low_6
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1420_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 14392497 - 14392767
Alignment:
| Q |
7 |
tagataatacttaatagtatattgttgtaggaaggtatttgtcattgctctgaaaaagattcttccattgtgttgcagtaactttgtgaactagattagt |
106 |
Q |
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| T |
14392497 |
tagatattacttaatagtatattgttgtaggaaggtatttgtcattgctctgaaaaatattcttccattgtgttgcagtaactttgtgaactagattagt |
14392596 |
T |
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| Q |
107 |
tgacacttgtatcatatttatcatgaatatcaataattataatactatactttgtcgaagatttttcaattgaaaaatgatagtatctcagtcagttgga |
206 |
Q |
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| T |
14392597 |
tgacacttgtatcatatttatcatgaataataataattataatactatgctttgtcgaagatttttcaattgaaaaatgatagtatctcagtcagttgga |
14392696 |
T |
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| Q |
207 |
tgtgacagtaaagatgaacacataaagagaaaatatgaataatgtgtgaatgataatgaataaataaatac |
277 |
Q |
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| T |
14392697 |
tgtgacagtaaagatgaacacataaagagaaaatatgaataatgtgtgaatgataataaataaataaatac |
14392767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 521
Target Start/End: Original strand, 14393299 - 14393369
Alignment:
| Q |
451 |
tactcttccttcgcatttatttgaagttattgaattcaagtcatgctattcatgattttatagataacgtg |
521 |
Q |
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| T |
14393299 |
tactcttccttaacatttatttgaagttattgaagtcaagtcatgctattcataattctgtagataacgtg |
14393369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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