View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1420_low_9 (Length: 480)

Name: NF1420_low_9
Description: NF1420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1420_low_9
NF1420_low_9
[»] chr2 (16 HSPs)
chr2 (98-279)||(35734525-35734706)
chr2 (98-279)||(10355624-10355805)
chr2 (98-279)||(16254926-16255107)
chr2 (98-275)||(28808682-28808864)
chr2 (98-301)||(7759303-7759522)
chr2 (98-301)||(34210347-34210560)
chr2 (100-272)||(16256139-16256321)
chr2 (98-279)||(43589809-43590000)
chr2 (1-38)||(10355864-10355901)
chr2 (1-38)||(16255167-16255204)
chr2 (1-38)||(35734428-35734465)
chr2 (1-38)||(28808923-28808960)
chr2 (114-185)||(35851671-35851742)
chr2 (1-30)||(7759088-7759117)
chr2 (1-30)||(7759132-7759161)
chr2 (1-37)||(16256384-16256420)
[»] chr1 (29 HSPs)
chr1 (98-274)||(49622841-49623016)
chr1 (98-272)||(15544441-15544615)
chr1 (100-271)||(46833179-46833352)
chr1 (304-461)||(49623081-49623233)
chr1 (98-279)||(29743408-29743599)
chr1 (98-279)||(11376619-11376810)
chr1 (98-301)||(42886646-42886864)
chr1 (98-279)||(51621791-51621972)
chr1 (98-279)||(44565005-44565196)
chr1 (98-225)||(261672-261798)
chr1 (98-279)||(2326768-2326959)
chr1 (216-279)||(21374002-21374065)
chr1 (98-185)||(37661901-37661989)
chr1 (98-213)||(33505744-33505859)
chr1 (1-38)||(261575-261612)
chr1 (1-38)||(2326672-2326709)
chr1 (1-38)||(15544675-15544712)
chr1 (1-38)||(44565256-44565293)
chr1 (1-38)||(49622744-49622781)
chr1 (1-38)||(51621695-51621732)
chr1 (304-380)||(49602734-49602810)
chr1 (3-38)||(46833445-46833480)
chr1 (5-38)||(11376870-11376903)
chr1 (98-151)||(15429337-15429390)
chr1 (1-37)||(29743658-29743694)
chr1 (267-301)||(11376582-11376616)
chr1 (267-301)||(21374068-21374102)
chr1 (1-30)||(42886921-42886950)
chr1 (257-301)||(25700306-25700350)
[»] chr6 (8 HSPs)
chr6 (98-282)||(18227319-18227503)
chr6 (100-211)||(20219057-20219168)
chr6 (100-211)||(22113082-22113193)
chr6 (98-279)||(11455106-11455297)
chr6 (162-262)||(17508420-17508520)
chr6 (1-38)||(18227562-18227599)
chr6 (1-30)||(20219243-20219272)
chr6 (1-30)||(22113268-22113297)
[»] scaffold0470 (1 HSPs)
scaffold0470 (98-279)||(60-251)
[»] chr8 (13 HSPs)
chr8 (98-279)||(6610772-6610963)
chr8 (98-221)||(43633687-43633808)
chr8 (100-279)||(2955918-2956107)
chr8 (100-225)||(36557098-36557223)
chr8 (101-279)||(40977542-40977725)
chr8 (219-303)||(22976388-22976472)
chr8 (98-225)||(21595150-21595277)
chr8 (219-279)||(43047901-43047961)
chr8 (1-38)||(43633868-43633905)
chr8 (98-197)||(43047984-43048083)
chr8 (98-184)||(22976474-22976560)
chr8 (1-37)||(6610675-6610711)
chr8 (261-301)||(36557047-36557087)
[»] chr7 (9 HSPs)
chr7 (98-270)||(29008622-29008804)
chr7 (98-279)||(12313887-12314068)
chr7 (98-279)||(1827889-1828080)
chr7 (100-279)||(47645423-47645612)
chr7 (98-275)||(33118636-33118828)
chr7 (99-301)||(44119040-44119256)
chr7 (217-272)||(40461283-40461338)
chr7 (1-34)||(29008526-29008559)
chr7 (1-30)||(42027820-42027849)
[»] chr4 (24 HSPs)
chr4 (98-272)||(38024524-38024708)
chr4 (98-301)||(6885015-6885234)
chr4 (98-270)||(29118913-29119085)
chr4 (98-225)||(37563788-37563915)
chr4 (98-279)||(49284074-49284259)
chr4 (98-263)||(55873512-55873687)
chr4 (98-225)||(29191025-29191151)
chr4 (207-298)||(54975749-54975840)
chr4 (98-174)||(54975830-54975906)
chr4 (100-279)||(42739582-42739771)
chr4 (98-279)||(1921145-1921336)
chr4 (98-279)||(22443731-22443922)
chr4 (100-223)||(47497566-47497690)
chr4 (98-213)||(41279202-41279317)
chr4 (112-180)||(8067199-8067268)
chr4 (100-267)||(39593207-39593379)
chr4 (216-279)||(30548051-30548114)
chr4 (5-38)||(29191204-29191237)
chr4 (1-38)||(37563973-37564010)
chr4 (1-38)||(38024428-38024465)
chr4 (1-38)||(54975965-54976002)
chr4 (267-301)||(22443925-22443959)
chr4 (267-301)||(38024718-38024752)
chr4 (267-301)||(42739774-42739808)
[»] chr5 (11 HSPs)
chr5 (104-271)||(30411399-30411577)
chr5 (98-264)||(35384171-35384347)
chr5 (98-279)||(1751295-1751486)
chr5 (106-279)||(11726579-11726762)
chr5 (98-279)||(10329701-10329894)
chr5 (98-279)||(37275944-37276135)
chr5 (98-185)||(37275249-37275336)
chr5 (216-279)||(37275334-37275397)
chr5 (1-38)||(35384406-35384443)
chr5 (261-299)||(25595631-25595669)
chr5 (1-38)||(30411296-30411333)
[»] scaffold0155 (1 HSPs)
scaffold0155 (100-277)||(27987-28174)
[»] chr3 (3 HSPs)
chr3 (98-279)||(46485484-46485675)
chr3 (114-215)||(7311392-7311490)
chr3 (267-301)||(46485678-46485712)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 35734525 - 35734706
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  35734525 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 35734624  T
Q  198 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  35734625 catatttaattaaaatcccttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctcccctcc 35734706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 10355805 - 10355624
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| || ||||||    
T  10355805 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccttatgaaccaaaca 10355706  T
Q  198 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||    
T  10355705 catatttaattaaaatctcttccctcccatcatttgaaccaaacatatatttaattgatatatttccccttcccttccctcc 10355624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 16255107 - 16254926
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  16255107 tgaagtgaataatataaagatcttgatattgtttcaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 16255008  T
Q  198 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||| ||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  16255007 catatttaattaaaatcccttccctcccattatttgaaccaaacatatatttaattgatatatcttcccttccctcccctcc 16254926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 98 - 275
Target Start/End: Complemental strand, 28808864 - 28808682
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct-----tataaatc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||     ||| || |    
T  28808864 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctcccctccccttatgaacc 28808765  T
Q  193 aaacacatatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctccc 275  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  28808764 aaacacatatttaattaaaatatcttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctccc 28808682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 98 - 301
Target Start/End: Original strand, 7759303 - 7759522
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaag-taatttggttttaaaatccctctccttcccttataaatcaaac 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||| ||| ||| ||||||| || |||||    
T  7759303 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaaaataatttggttttaaaatctctcccctccccttatgaaccaaac 7759402  T
Q  197 acatatttgattaaaatctc----------ttccctcccatcatttgaagcaaatatatatttaattgatatatctcccc-----ttccctcccctccat 281  Q
    |||||||| |||||||||||          ||||||||||||||||||| |||| |||||||||||||||||||||||||     |||||||||||||||    
T  7759403 acatatttaattaaaatctcttccctcccattccctcccatcatttgaaccaaacatatatttaattgatatatctccccttcctttccctcccctccat 7759502  T
Q  282 taaaaccactcccctcccct 301  Q
    ||||||| ||||||||||||    
T  7759503 taaaacccctcccctcccct 7759522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 98 - 301
Target Start/End: Original strand, 34210347 - 34210560
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  34210347 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 34210446  T
Q  198 catatttgattaaaatctcttccctccc----------atcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaac 287  Q
     |||||||||||||||| || |||||||          |||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  34210447 tatatttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttccctcccctccattaaaac 34210546  T
Q  288 cactcccctcccct 301  Q
      ||||||||||||    
T  34210547 tcctcccctcccct 34210560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 16256321 - 16256139
Alignment:
Q  100 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 199  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | ||||||||| |    
T  16256321 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaatcaaacata 16256222  T
Q  200 tatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 272  Q
    ||||||||||||||          | |||||||||||||||||||| |||| |||||||||||||| |||||| |||||||||    
T  16256221 tatttgattaaaatccctcccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttccct 16256139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 43589809 - 43590000
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||  ||||| ||||||||  ||||||||| ||||||||||||| ||||||||||| ||  ||| ||||| | || ||||||    
T  43589809 tgaagtgaataatttaaaaattgtgatactgttttaatattagagggataaaaaagtaatttagttttaaaatctctgccctccccttgtgaaccaaaca 43589908  T
Q  198 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
      ||||||||||||||          | |||||||||||||||||||| |||| |||||||||||| | |||||||||||||||| ||||||    
T  43589909 tgtatttgattaaaattcctcccctccccttccctcccatcatttgaaccaaacatatatttaattaaaatatctccccttcccttccctcc 43590000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10355901 - 10355864
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10355901 gctctaatatttatgaatacctaatattttgttagaac 10355864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16255204 - 16255167
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16255204 gctctaatatttatgaatacctaatattttgttagaac 16255167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35734428 - 35734465
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35734428 gctctaatatttatgaatacctaatattttgttagaac 35734465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28808960 - 28808923
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  28808960 gctctaatatttatgaatatctaatattttgttagaac 28808923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 35851742 - 35851671
Alignment:
Q  114 aaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 185  Q
    |||||||||| ||||||||||  |||||| || |||||||||||||||| || |||||| |  |||||||||    
T  35851742 aaaatcatgagattgttttaatattagagcgataaaaaagtaatttggtgttgaaatcctttcccttccctt 35851671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7759088 - 7759117
Alignment:
Q  1 gctctaatatttatgaatacctaatatttt 30  Q
    ||||||||||||||||||||||||||||||    
T  7759088 gctctaatatttatgaatacctaatatttt 7759117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7759132 - 7759161
Alignment:
Q  1 gctctaatatttatgaatacctaatatttt 30  Q
    ||||||||||||||||||||||||||||||    
T  7759132 gctctaatatttatgaatacctaatatttt 7759161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16256420 - 16256384
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaa 37  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  16256420 gctctaatatttatgaatacccaatatcttgttagaa 16256384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 98 - 274
Target Start/End: Original strand, 49622841 - 49623016
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||||||    
T  49622841 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaaataatttggttttaaaatccctctc-ttcccttataaaccaaaca 49622939  T
Q  198 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcc 274  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  49622940 catatttaattaaaatttcttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccctcc 49623016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 98 - 272
Target Start/End: Complemental strand, 15544615 - 15544441
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| || ||||||    
T  15544615 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaggtaatttggttttaaaatccctcccctccccttatgaaccaaaca 15544516  T
Q  198 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 272  Q
    ||||||| ||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||    
T  15544515 catatttaattaaaatcccttccctcccatcatttgaaccaaacatgtatttaattgatatatctccccttccct 15544441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 100 - 271
Target Start/End: Complemental strand, 46833352 - 46833179
Alignment:
Q  100 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaa--gtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| || ||| ||||||| || ||||||    
T  46833352 aagtgaataatagaaaaatcatgatattgttttaaggttagagggataaaaaaaagtaatttggttttaaaatccttcccctccccttatgaaccaaaca 46833253  T
Q  198 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccc 271  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46833252 catatttaattaaaatcccttccctcccatcatttgaaccaaatatatatttaattgatatatctccccttccc 46833179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 304 - 461
Target Start/End: Original strand, 49623081 - 49623233
Alignment:
Q  304 atggttggatgagtccatttgtttcaagatcacacctttcaaacttgaaacaataatatattgaacccccgccatactacagtactactaccatctataa 403  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||     ||||||||||||||||||    
T  49623081 atggttggatgagtccatttgtttcaagagcacacctttcaaacttgaaacaataatatattgaaaccccgccatac-----tactactaccatctataa 49623175  T
Q  404 tgtttcaaacattctcctatcacggcgtaaatatcacatatactctacccaacaaggt 461  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49623176 tgtttcaagcattctcctatcacggcgtaaatatcacatatactctacccaactaggt 49623233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 29743599 - 29743408
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  29743599 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 29743500  T
Q  198 catatttgattaaaatctcttcc----------ctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||| ||||||||| |||||          ||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||    
T  29743499 catatttaattaaaatcccttcccttcccttctctcccatcatttgaaccaaacatatatttaattgatatatctccccttccattccctcc 29743408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 11376810 - 11376619
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  11376810 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 11376711  T
Q  198 catatttgattaaaatctcttccctc----------ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||| ||||||||||||||||||          |||||||||||| |||| |||||||||||||||||||||||| || ||||||||||    
T  11376710 catatttaattaaaatctcttccctcccattccctcccatcatttgaaccaaacatatatttaattgatatatctcccttttcctcccctcc 11376619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 98 - 301
Target Start/End: Complemental strand, 42886864 - 42886646
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  42886864 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 42886765  T
Q  198 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctc-----cccttccctcccctccatt 282  Q
    ||||||| ||||||||          | ||||||| |||||||||||| |||| ||||||||||||||||||||||     ||||||||| |||||||||    
T  42886764 catatttaattaaaatcccttccatccccttcccttccatcatttgaaccaaacatatatttaattgatatatctccccttcccttcccttccctccatt 42886665  T
Q  283 aaaaccactcccctcccct 301  Q
    |||||| ||||||||||||    
T  42886664 aaaacccctcccctcccct 42886646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 51621791 - 51621972
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||| ||| || || ||||||||||||||||||||||||| ||| |||  |||||| || ||||||    
T  51621791 tgaagtgaataatataaaaatcatgatattgttttaagattacagtgataaaaaagtaatttggttttaaaatctctcccctctccttatgaaccaaaca 51621890  T
Q  198 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||| |||||||||  || |||||||||||||||| |||| |||||| ||||||||||||||| |||||||| ||||||    
T  51621891 catatttaattaaaatccatttcctcccatcatttgaaccaaacatatatctaattgatatatctctccttcccttccctcc 51621972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 44565196 - 44565005
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| ||||||| || ||||||    
T  44565196 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaggtaatttgattttaaaatccctcccctccccttatgaaccaaaca 44565097  T
Q  198 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||| ||| ||||||          ||||| |||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||    
T  44565096 catatttaattgaaatctctttcctccccttccttcccatcatttgaaccaaacatgtatttaattgatatatctccccttcccttccctcc 44565005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 261672 - 261798
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||| ||||||| || ||||||    
T  261672 tgaagtgaataatataaaaatcatgatattgttttaaggttagagg-ataaaaaagtaatttggttttaaaatctctcccctccccttatgaaccaaaca 261770  T
Q  198 catatttgattaaaatctcttccctccc 225  Q
    ||||||| ||||||||||||||||||||    
T  261771 catatttaattaaaatctcttccctccc 261798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 2326768 - 2326959
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||||||||||| ||| ||| ||| || |||| |    
T  2326768 tgaagtgaataatataaaaatcataatattgttttaaggttagaggggtaaaaaggtaatttggttttaaaatccctcccctccccgtatgaaccaaata 2326867  T
Q  198 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||| |||||||||||||||||||||| | ||||||    
T  2326868 catatttaattaaaataccttcactccccttccctcccatcatttgaaccaaacatatatataattgatatatctccccttccattccctcc 2326959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 21374002 - 21374065
Alignment:
Q  216 cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    |||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  21374002 cttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 21374065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 37661901 - 37661989
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctccttccctt 185  Q
    ||||||||||||| |||||||| ||||| | ||||||  |||||||||  ||||||||||||| ||||||||||||||| ||| |||||    
T  37661901 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaagtaatttagttttaaaatccctcccctcccctt 37661989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 33505859 - 33505744
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  33505859 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 33505760  T
Q  198 catatttgattaaaat 213  Q
     |||||| ||| ||||    
T  33505759 tatatttaattgaaat 33505744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 261575 - 261612
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  261575 gctctaatatttatgaatacctaatattttgttagaac 261612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2326672 - 2326709
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2326672 gctctaatatttatgaatacctaatattttgttagaac 2326709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15544712 - 15544675
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15544712 gctctaatatttatgaatacctaatattttgttagaac 15544675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44565293 - 44565256
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44565293 gctctaatatttatgaatacctaatattttgttagaac 44565256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49622744 - 49622781
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49622744 gctctaatatttatgaatacctaatattttgttagaac 49622781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 51621695 - 51621732
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51621695 gctctaatatttatgaatacctaatattttgttagaac 51621732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 380
Target Start/End: Original strand, 49602734 - 49602810
Alignment:
Q  304 atggttggatgagtccatttgtttcaagatcacacctttcaaacttgaaacaataatatattgaacccccgccatac 380  Q
    ||||||||||||||||||||||||||| | ||   |||||||||| ||||| | | |||||||||||||| ||||||    
T  49602734 atggttggatgagtccatttgtttcaatagcaacactttcaaactggaaactagactatattgaacccccaccatac 49602810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 46833480 - 46833445
Alignment:
Q  3 tctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  46833480 tctaatatttatgaatacctaatattttgttagaac 46833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 11376903 - 11376870
Alignment:
Q  5 taatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||    
T  11376903 taatatttatgaatacctaatattttgttagaac 11376870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 15429390 - 15429337
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaa 151  Q
    ||||||||||||| | |||||||||| ||||||||||| ||||||||| |||||    
T  15429390 tgaagtgaataattttaaaatcatgagattgttttaagattagagggataaaaa 15429337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29743694 - 29743658
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaa 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  29743694 gctctaatatttatgaatatctaatattttgttagaa 29743658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 301
Target Start/End: Complemental strand, 11376616 - 11376582
Alignment:
Q  267 ttccctcccctccattaaaaccactcccctcccct 301  Q
    |||||||||||||||||||||| ||||||||||||    
T  11376616 ttccctcccctccattaaaacccctcccctcccct 11376582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 21374068 - 21374102
Alignment:
Q  267 ttccctcccctccattaaaaccactcccctcccct 301  Q
    |||||||||||||||||||||| ||||||||||||    
T  21374068 ttccctcccctccattaaaacccctcccctcccct 21374102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 42886950 - 42886921
Alignment:
Q  1 gctctaatatttatgaatacctaatatttt 30  Q
    ||||||||||||||||||||||||||||||    
T  42886950 gctctaatatttatgaatacctaatatttt 42886921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 25700306 - 25700350
Alignment:
Q  257 atatctccccttccctcccctccattaaaaccactcccctcccct 301  Q
    ||||||||||| ||||||||||| |||||| | ||||||||||||    
T  25700306 atatctcccctcccctcccctccgttaaaatccctcccctcccct 25700350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 98 - 282
Target Start/End: Complemental strand, 18227503 - 18227319
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| || ||||||    
T  18227503 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccttatgaaccaaaca 18227404  T
Q  198 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccatt 282  Q
    ||||||| ||||||||| | |||||||||||||||||| |||| |||||||||||||||||| ||||| ||| || |||||||||    
T  18227403 catatttaattaaaatcccgtccctcccatcatttgaaccaaacatatatttaattgatatacctcccattctcttccctccatt 18227319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 20219168 - 20219057
Alignment:
Q  100 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 199  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||  ||||| | || ||||||||    
T  20219168 aagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaaaatcccttcccaccccttgtgaaccaaacaca 20219069  T
Q  200 tatttgattaaa 211  Q
    ||||| ||||||    
T  20219068 tatttaattaaa 20219057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 22113193 - 22113082
Alignment:
Q  100 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 199  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  ||  ||||| | || ||||||||    
T  22113193 aagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaagtaatttggttttaaaatcccttcccaccccttgtgaaccaaacaca 22113094  T
Q  200 tatttgattaaa 211  Q
    ||||| ||||||    
T  22113093 tatttaattaaa 22113082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 11455297 - 11455106
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| ||||||||  |||| | ||||||  ||||||| | ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  11455297 tgaagtgaataatttaaaaatc--gatactattttaatattagagg-ataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 11455201  T
Q  198 catatttgattaaaat-------------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
     ||||||||||||| |             | ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  11455200 tatatttgattaaattaatccctcccgtccccttccctcctatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 11455106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 17508520 - 17508420
Alignment:
Q  162 ttttaaaatccctctccttcccttataaatcaaacacatatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatc 261  Q
    ||||||||||||||   || |||| | |||||||||||| ||| |||| ||||||| ||||||| || |||||| |||| |||||||||||| | |||||    
T  17508520 ttttaaaatccctcaattttccttgtgaatcaaacacatttttaattagaatctctcccctcccctcttttgaaccaaacatatatttaattcaaatatc 17508421  T
Q  262 t 262  Q
    |    
T  17508420 t 17508420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18227599 - 18227562
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  18227599 gctctaatatttatgaatacctaatattatgtgagaac 18227562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 20219272 - 20219243
Alignment:
Q  1 gctctaatatttatgaatacctaatatttt 30  Q
    ||||||||||||||||||||||||||||||    
T  20219272 gctctaatatttatgaatacctaatatttt 20219243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 22113297 - 22113268
Alignment:
Q  1 gctctaatatttatgaatacctaatatttt 30  Q
    ||||||||||||||||||||||||||||||    
T  22113297 gctctaatatttatgaatacctaatatttt 22113268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 60 - 251
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  60 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 159  T
Q  198 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||    
T  160 catatttaattaaaatcccttccctccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccctttcccttccctcc 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 6610772 - 6610963
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  6610772 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 6610871  T
Q  198 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||    
T  6610872 catatttaattaaaatcccttccctccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccctttcccttccctcc 6610963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 43633808 - 43633687
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  43633808 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctccccttcccttatgaaccaaaca 43633709  T
Q  198 catatttgattaaaatctcttccc 221  Q
    |  |||| ||||||||| ||||||    
T  43633708 c--atttaattaaaatcccttccc 43633687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 279
Target Start/End: Complemental strand, 2956107 - 2955918
Alignment:
Q  100 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 199  Q
    ||||| ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||| ||  ||| ||||| | || |||||| |    
T  2956107 aagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatctctaccctccccttgtgaaccaaacata 2956008  T
Q  200 tatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||||||||||||          |||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  2956007 tatttgattaaaatctctccccttcccttccctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 2955918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 36557223 - 36557098
Alignment:
Q  100 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 199  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| |||| |||||| |    
T  36557223 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtaaaccaaacata 36557124  T
Q  200 tatttgattaaaatctcttccctccc 225  Q
    ||||||||||||||| || |||||||    
T  36557123 tatttgattaaaatccctcccctccc 36557098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 101 - 279
Target Start/End: Complemental strand, 40977725 - 40977542
Alignment:
Q  101 agtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacat 200  Q
    |||||||||| |||||||  ||||| | ||||||  ||| ||||| |||| |||||||| ||||||||||||||| ||| ||||  | || |||||| ||    
T  40977725 agtgaataatttaaaaattgtgatactattttaatattatagggacaaaacagtaatttagttttaaaatccctcccctcccctcgtgaaccaaacatat 40977626  T
Q  201 atttgattaaaatctcttccctc-----ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    |||||||||||||| || |||||     |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  40977625 atttgattaaaatccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 40977542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 22976472 - 22976388
Alignment:
Q  219 ccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaaccactcccctcccctag 303  Q
    |||| |||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  22976472 cccttccatcatttgaaccaaacatatatttaattgaaatatctccctttccctcccctccattaaaacccctcccctcccctag 22976388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 21595150 - 21595277
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| |||||||||||  |||||| ||||| | || ||||||    
T  21595150 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatctttctcctccccttctgaaccaaaca 21595249  T
Q  198 catatttgattaaaatctcttccctccc 225  Q
     |||||||||||||||| || |||||||    
T  21595250 tatatttgattaaaatccctcccctccc 21595277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 43047961 - 43047901
Alignment:
Q  219 ccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    |||||| |||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  43047961 ccctcctatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 43047901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43633905 - 43633868
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43633905 gctctaatatttatgaatacctaatattttgttagaac 43633868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 43048083 - 43047984
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||| | ||  | ||||||  ||||||||| ||||||||||||| |||||||||| |||| ||| ||||| | || ||||||    
T  43048083 tgaagtgaataatttaaaaatcgttatgctattttaatattagagggataaaaaagtaatttagttttaaaattcctcccctccccttgtgaaccaaaca 43047984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 22976560 - 22976474
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct 184  Q
    ||||||||||||| | |||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||| ||||||| ||||||||    
T  22976560 tgaagtgaataattttaaaattgtgatactattttaatattatagggataaaaaagtaatttagttttaatatccctccccttccct 22976474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6610675 - 6610711
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaa 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  6610675 gctctaatatttatgaatatctaatattttgttagaa 6610711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 36557087 - 36557047
Alignment:
Q  261 ctccccttccctcccctccattaaaaccactcccctcccct 301  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  36557087 ctccctttccctcccctccattaaaacccctcccctcccct 36557047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 29008622 - 29008804
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||  || ||||||    
T  29008622 tgaagtgaataatataaaaatcataatattgttttaaggttagagggataaaaaagtaatttggttttaaaatccctcccctccccgtacgaaccaaaca 29008721  T
Q  198 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttcc 270  Q
    ||||||| ||||||||||          |||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  29008722 catatttaattaaaatctcttcactccccttccctcccatcatttgaatcaaacatatatttaattgatatatctccccttcc 29008804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 12313887 - 12314068
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||  ||||||||||||||| ||| ||| | | || ||||||    
T  12313887 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaattcagttttaaaatccctcccctccccctgtgaaccaaaca 12313986  T
Q  198 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  12313987 catatttaattaaaatctcttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 12314068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 1828080 - 1827889
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||| ||||| |||||||| ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  1828080 tgaagtggataatttaaaaatcgtgatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 1827981  T
Q  198 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
     |||||||||||||||||          ||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  1827980 tatatttgattaaaatctctcccctccccttcccttccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 1827889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 100 - 279
Target Start/End: Complemental strand, 47645612 - 47645423
Alignment:
Q  100 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 199  Q
    ||||||||||| |||||||| ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |    
T  47645612 aagtgaataatttaaaaatcgtgatactattttaatattaaagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacata 47645513  T
Q  200 tatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||||||||||||          |||||||| ||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  47645512 tatttgattaaaatctctcccctccccttccctctcatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 47645423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 98 - 275
Target Start/End: Complemental strand, 33118828 - 33118636
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccct-----tataaatc 192  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| || |||||||||| ||||||||||||||| ||| ||||     | | || |    
T  33118828 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataataaagtaatttagttttaaaatccctcccctcccctacccttgtgaacc 33118729  T
Q  193 aaacacatatttgattaaaatctcttccctcc----------catcatttgaagcaaatatatatttaattgatatatctccccttccctccc 275  Q
    ||||| ||||||||||||||||||||||||||          ||||||||||| |||| |||||||||||||| |||||||||||||||||||    
T  33118728 aaacatatatttgattaaaatctcttccctccccttccctctcatcatttgaaccaaacatatatttaattgaaatatctccccttccctccc 33118636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 99 - 301
Target Start/End: Original strand, 44119040 - 44119256
Alignment:
Q  99 gaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 198  Q
    |||||||||||| |||||||| ||||| | ||||||  ||||| ||| ||||||||||||| ||||||||||||||| | | ||||| | || ||||||     
T  44119040 gaagtgaataatttaaaaatcgtgatactattttaatattagatggataaaaaagtaatttagttttaaaatccctcccatccccttctgaaccaaacat 44119139  T
Q  199 atatttgattaaaatc--------------tcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaa 284  Q
    ||||||||||||||||               | |||| ||||||||||||| |||| |||||||||||||| |||| |  |||||||| |||||||||||    
T  44119140 atatttgattaaaatccatccccttcccatccctcccacccatcatttgaaccaaacatatatttaattgaaatatttttccttcccttccctccattaa 44119239  T
Q  285 aaccactcccctcccct 301  Q
    | |  ||||||||||||    
T  44119240 acctcctcccctcccct 44119256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 40461283 - 40461338
Alignment:
Q  217 ttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 272  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  40461283 ttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttccct 40461338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29008526 - 29008559
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgtta 34  Q
    ||||||||||||||||||||||||||||||||||    
T  29008526 gctctaatatttatgaatacctaatattttgtta 29008559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 42027820 - 42027849
Alignment:
Q  1 gctctaatatttatgaatacctaatatttt 30  Q
    ||||||||||||||||||||||||||||||    
T  42027820 gctctaatatttatgaatacctaatatttt 42027849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 98 - 272
Target Start/End: Original strand, 38024524 - 38024708
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||| || |||| || ||||||    
T  38024524 tgaagtgaataatataaaaatcatgatattgttttaaggttagaaggataaaaaagtaatttggttttaaaatctctcccctccctttatgaaccaaaca 38024623  T
Q  198 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccct 272  Q
    ||||||| ||||||||          | |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  38024624 catatttaattaaaattcattccctccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccct 38024708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 98 - 301
Target Start/End: Original strand, 6885015 - 6885234
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttag-agggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaac 196  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||| ||||||||| |||| ||||||||||| || |||||    
T  6885015 tgaagtgaataatataaaaatcatgatattgttttaaggttagcacggataaaaaggtaatttgattttaaaattcctccccttcccttatgaaccaaac 6885114  T
Q  197 acatatttgattaaaatctcttc----------cctcccatcatttgaagcaaatatatatttaattgatatatctc-----cccttccctcccctccat 281  Q
    |||||||| ||||||||| ||||          |||||||||||||||| |||||||||||||||||||||||||||     | ||||||||||||||||    
T  6885115 acatatttaattaaaatcccttctctccccctacctcccatcatttgaaccaaatatatatttaattgatatatctctccttctcttccctcccctccat 6885214  T
Q  282 taaaaccactcccctcccct 301  Q
    ||||||| ||| ||||||||    
T  6885215 taaaacccctctcctcccct 6885234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 98 - 270
Target Start/End: Complemental strand, 29119085 - 29118913
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||| | ||| | ||||||| ||||||||| ||||||||||||| ||||||||||||||| |||  | || | || ||||||    
T  29119085 tgaagtgaataatttaaaaatcgtaatactattttaagattagagggataaaaaagtaatttagttttaaaatccctcccctctctttgtgaaccaaaca 29118986  T
Q  198 catatttgattaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttcc 270  Q
     ||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||| ||||||||||||||    
T  29118985 tatatttgattaaaatctctcccctcccatcatttgaaccaatcatatatttaattgaaatatctccccttcc 29118913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 37563915 - 37563788
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| ||||||| || ||||||    
T  37563915 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatctctcccctccccttatgaaccaaaca 37563816  T
Q  198 catatttgattaaaatctcttccctccc 225  Q
     |||||| ||||||||||||| ||||||    
T  37563815 tatatttaattaaaatctctttcctccc 37563788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 49284074 - 49284259
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||||||||| | ||||||  ||||||||| ||||||||||||| ||||||||||| ||| |||| |||| | || ||||||    
T  49284074 tgaagtgaataatttaaaaatcatgatactattttaatattagagggataaaaaagtaatttagttttaaaatctctcccctt-ccttgtgaaccaaaca 49284172  T
Q  198 catatttgattaaaat-----ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
     |||||||||||||||     | |||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  49284173 tatatttgattaaaatccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatatctcccattcccttccctcc 49284259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 98 - 263
Target Start/End: Complemental strand, 55873687 - 55873512
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||  ||| ||||| | || ||||||    
T  55873687 tgaagtgaataatttaaaaatcatgatattattttaagattagagggataaaaaagtaatttggttttaaaatctcttccctccccttgtgaaccaaaca 55873588  T
Q  198 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctc 263  Q
    ||||||| ||||||||||          ||||||| | ||| |||||| |||||||||||||||||||||||||||    
T  55873587 catatttaattaaaatctcccccctccccttcccttctatcgtttgaaccaaatatatatttaattgatatatctc 55873512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 29191151 - 29191025
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||| ||| || ||||||    
T  29191151 tgaagtgaataatataaaaatcataatattgttttaaggttagagggataaaaaggtaatttggttttaaaatccctc-ccctcccgtatgaaccaaaca 29191053  T
Q  198 catatttgattaaaatctcttccctccc 225  Q
    |||| || ||||||||| |||| |||||    
T  29191052 catacttaattaaaatcccttcactccc 29191025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 54975840 - 54975749
Alignment:
Q  207 ttaaaatctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctccattaaaaccactcccctcc 298  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  54975840 ttaaaatcccttccctcccatcatttgaaccaaatatatatttaattgatatatctccccttcccttccctccattaaaacccctcccctcc 54975749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 54975906 - 54975830
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccct 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  54975906 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatccct 54975830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 279
Target Start/End: Original strand, 42739582 - 42739771
Alignment:
Q  100 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 199  Q
    ||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| |||||||||| |||| ||| ||||| | || |||||| |    
T  42739582 aagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaattcctcccctccccttgtgaaccaaacata 42739681  T
Q  200 tatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||||||||||          | ||||| |||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||||    
T  42739682 tatttgattaaaatccctcccctccccttccgtcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccctcc 42739771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 1921336 - 1921145
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||  ||||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  1921336 tgaagtgaataatttaaaaattgtgatactattttaatattatagggataaaaaagtaattttgttttaaaatccctcccctaccctcgtgaaccaaaca 1921237  T
Q  198 catatttgattaaaatctcttccctc----------ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
     |||||||||||||||| || |||||          |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  1921236 tatatttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 1921145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 22443731 - 22443922
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||  | ||| | ||||||  ||| ||||| ||||||||||||| ||||||||||||||| ||| ||||  | || ||||||    
T  22443731 tgaagtgaataatttaaaaattgtaatactattttaatattatagggataaaaaagtaatttagttttaaaatccctcccctcccctcgtgaaccaaaca 22443830  T
Q  198 catatttgattaaaatctcttccctc----------ccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
     |||||||||||||||| || |||||          |||||||||||| |||| |||||||||||||| ||||||||| |||||| ||||||    
T  22443831 tatatttgattaaaatccctcccctcccctccccttccatcatttgaaccaaacatatatttaattgaaatatctccctttcccttccctcc 22443922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 100 - 223
Target Start/End: Complemental strand, 47497690 - 47497566
Alignment:
Q  100 aagtgaataatataaaaatcatgatattgttttaagg-ttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 198  Q
    ||||||||||| | |||||||| | || ||||||||| ||||||||| |||||||||||||||| ||||||||| || ||| ||||| | || ||||||     
T  47497690 aagtgaataattttaaaatcataagatagttttaaggattagagggataaaaaagtaatttggtgttaaaatccttcacctccccttgtgaaccaaacat 47497591  T
Q  199 atatttgattaaaatctcttccctc 223  Q
    | |||| |||||||||||| |||||    
T  47497590 acatttaattaaaatctctcccctc 47497566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 41279317 - 41279202
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaac 196  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||  ||||||| ||||||| | ||||||| ||  ||| ||||| | || ||||     
T  41279317 tgaagtgaataatttaaaaatcatgatattgttttaagattagagggataaaaaaagcaatttgg-tataaaatctcttccctccccttgtgaaccaaat 41279219  T
Q  197 acatatttgattaaaat 213  Q
    |||||||| ||||||||    
T  41279218 acatatttaattaaaat 41279202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 8067268 - 8067199
Alignment:
Q  112 taaaaatcatgatattgttttaaggttagaggga-gaaaaaagtaatttggttttaaaatccctctcctt 180  Q
    |||||||||||||||||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||||    
T  8067268 taaaaatcatgatattgttttaagattaaagggataaaaaaagtaacttggatttaaaatccctctcctt 8067199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 267
Target Start/End: Original strand, 39593207 - 39593379
Alignment:
Q  100 aagtgaataatataaaaatcatgatattgttttaagg-ttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacac 198  Q
    ||||| ||||| | |||||||||| || ||||||||| ||||| ||| ||||| |||||||||| |||||| ||||| ||| ||||| | || ||||||     
T  39593207 aagtggataattttaaaatcatgagatagttttaaggattagaaggataaaaaggtaatttggtgttaaaa-ccctcacctccccttctgaaccaaacat 39593305  T
Q  199 atatttgattaaaatctcttccctc-----ccatcatttgaagcaaatatatatttaattgatatatctcccct 267  Q
    | |||| |||||||||||| |||||     || || |||||| |||| | |||||||||| |||||||||||||    
T  39593306 acatttaattaaaatctctcccctccccttccctcttttgaaccaaacacatatttaattaatatatctcccct 39593379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 30548114 - 30548051
Alignment:
Q  216 cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    |||||||||| || |||||| |||| | |||||||||| | |||||||||||||||||||||||    
T  30548114 cttccctcccctcttttgaaccaaacacatatttaattaaaatatctccccttccctcccctcc 30548051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 29191237 - 29191204
Alignment:
Q  5 taatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||||    
T  29191237 taatatttatgaatacctaatattttgttagaac 29191204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37564010 - 37563973
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  37564010 gctctaatatttatgaatacctaatattttattagaac 37563973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38024428 - 38024465
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  38024428 gctctaatatttatgaatacctaatattttattagaac 38024465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 54976002 - 54975965
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  54976002 gctctaatatttatgaatatctaatattttgttagaac 54975965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 22443925 - 22443959
Alignment:
Q  267 ttccctcccctccattaaaaccactcccctcccct 301  Q
    |||||||||||||||||||||| ||||||||||||    
T  22443925 ttccctcccctccattaaaacccctcccctcccct 22443959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 38024718 - 38024752
Alignment:
Q  267 ttccctcccctccattaaaaccactcccctcccct 301  Q
    |||||||||||||||||||||| ||||||||||||    
T  38024718 ttccctcccctccattaaaacccctcccctcccct 38024752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 42739774 - 42739808
Alignment:
Q  267 ttccctcccctccattaaaaccactcccctcccct 301  Q
    |||||||||||||||||||||| ||||||||||||    
T  42739774 ttccctcccctccattaaaacccctcccctcccct 42739808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 30411399 - 30411577
Alignment:
Q  104 gaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatt 203  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || | ||||||||| ||||||||| |||||    
T  30411399 gaataatataaaaatcatgatattgttttaaggctagagggataaaaaagtaatttggttttaaaatccatcccattcccttatgaatcaaacatatatt 30411498  T
Q  204 tgattaaaatct-----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccc 271  Q
    | ||||||||||           |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  30411499 taattaaaatctcttccttcccccttccctcccatcatttgaaccaaacatatatttaattgatatatctccccttccc 30411577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 98 - 264
Target Start/End: Complemental strand, 35384347 - 35384171
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| || |||| || ||||||    
T  35384347 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggataaaaaagtaatttgattttaaaatctctcccctcccattatgaaccaaaca 35384248  T
Q  198 catatttgattaaaatctcttccc----------tcccatcatttgaagcaaatatatatttaattgatatatctcc 264  Q
    ||||||| ||||||||||||||||          |||||||||||||| |||| |||||||||||||||||||||||    
T  35384247 catatttaattaaaatctcttcccttcccttccgtcccatcatttgaaccaaacatatatttaattgatatatctcc 35384171  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 1751486 - 1751295
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||| ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | || ||||||    
T  1751486 tgaagtggataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaaca 1751387  T
Q  198 catatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
     |||||||||||||||||          |||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  1751386 tatatttgattaaaatctctcccctccccttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 1751295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 106 - 279
Target Start/End: Original strand, 11726579 - 11726762
Alignment:
Q  106 ataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatttg 205  Q
    ||||| |||||||| ||||| | ||||||  ||||||||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |||||||    
T  11726579 ataatttaaaaatcgtgatactattttaatattagagggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacatatatttg 11726678  T
Q  206 attaaaatctc----------ttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    |||||||||||          ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||    
T  11726679 attaaaatctctcccctccctttccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcccttccctcc 11726762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 10329701 - 10329894
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaa--aagtaatttggttttaaaatccctctccttcccttataaatcaaa 195  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| ||||  ||||||||| ||||||||||||||| | | ||||| | || ||||    
T  10329701 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggataaaaaaaagtaatttagttttaaaatccctcccatccccttgtgaaccaaa 10329800  T
Q  196 cacatatttgattaaaatctc----------ttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    || ||||||||||||||||||          ||||||||||||||||||| |||| |||||||||||||| |||||||||||||| | ||||||    
T  10329801 catatatttgattaaaatctctcccctctcattccctcccatcatttgaaccaaacatatatttaattgaaatatctccccttcctttccctcc 10329894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 37276135 - 37275944
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| | ||||||||| | ||||||||||| ||| ||| ||||| | || |||||     
T  37276135 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatgtagttttaaaatctctcccctccccttgtgaaccaaacc 37276036  T
Q  198 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
     |||||||||| ||||          | ||||||||||| |||||||| |||| |||||||||||||| |||||||||||||| | ||||||    
T  37276035 tatatttgattgaaatccctcccctccccttccctcccaccatttgaaccaaacatatatttaattgaaatatctccccttcctttccctcc 37275944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 37275249 - 37275336
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttccctt 185  Q
    ||||||||||||| |||||||| ||||| | ||||||  ||||||||| | ||||||||||| ||||||||||| ||| ||| |||||    
T  37275249 tgaagtgaataatttaaaaatcgtgatactattttaatattagagggatagaaaagtaatttagttttaaaatctctcccctcccctt 37275336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 37275334 - 37275397
Alignment:
Q  216 cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
    ||||||||||| |||||||| |||| |||||||||||||| ||||||||| |||| | ||||||    
T  37275334 cttccctcccaccatttgaaccaaacatatatttaattgaaatatctcccattcctttccctcc 37275397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35384443 - 35384406
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  35384443 gctctaatatttatgaatacctaatattttgttcgaac 35384406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 25595631 - 25595669
Alignment:
Q  261 ctccccttccctcccctccattaaaaccactcccctccc 299  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  25595631 ctccctttccctcccctccattaaaacccctcccctccc 25595669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30411296 - 30411333
Alignment:
Q  1 gctctaatatttatgaatacctaatattttgttagaac 38  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  30411296 gctctaatatttatggatatctaatattttgttagaac 30411333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 100 - 277
Target Start/End: Complemental strand, 28174 - 27987
Alignment:
Q  100 aagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacaca 199  Q
    ||||||||||  |||||||||||||| | ||||||  ||||| ||| ||||||||||||| ||||||||||||||| ||| ||||| | || |||||| |    
T  28174 aagtgaataagttaaaaatcatgatactattttaatattagatggataaaaaagtaatttagttttaaaatccctcccctccccttgtgaaccaaacata 28075  T
Q  200 tatttgattaaaatct----------cttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccct 277  Q
    ||||||||||||||||          |||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||| ||||    
T  28074 tatttgattaaaatctctcccgtccccttccctcccatcatttgaaccaaacatatatttaattgaaatatcttcccttcccttccct 27987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 46485484 - 46485675
Alignment:
Q  98 tgaagtgaataatataaaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaaca 197  Q
    ||||||||||||| |||||||  || || ||||||||  ||||||||| ||||||||||||| ||||||||||||||  ||| ||||| | || ||||||    
T  46485484 tgaagtgaataatttaaaaattgtgttactgttttaatattagagggataaaaaagtaatttagttttaaaatccctgccctccccttgtgaaccaaaca 46485583  T
Q  198 catatttgattaaaat----------ctcttccctcccatcatttgaagcaaatatatatttaattgatatatctccccttccctcccctcc 279  Q
      ||||||||||||||          | |||||||||||||||||||| |||| |||||||||||| | |||||||||||||||| ||||||    
T  46485584 tgtatttgattaaaatccctcccttccccttccctcccatcatttgaaccaaacatatatttaattaaaatatctccccttcccttccctcc 46485675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 7311490 - 7311392
Alignment:
Q  114 aaaatcatgatattgttttaaggttagagggagaaaaaagtaatttggttttaaaatccctctccttcccttataaatcaaacacatatttgattaaaat 213  Q
    |||||||||| ||||||||||| ||||||||| ||||   ||||||| |||||||||| |||  || ||||| || | |||||| |||||| ||||||||    
T  7311490 aaaatcatgagattgttttaagattagagggataaaa---taatttgattttaaaatctctcgtctccccttctacaccaaacatatatttaattaaaat 7311394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 46485678 - 46485712
Alignment:
Q  267 ttccctcccctccattaaaaccactcccctcccct 301  Q
    |||||||||||||||||||||| ||||||||||||    
T  46485678 ttccctcccctccattaaaacccctcccctcccct 46485712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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