View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14210_high_11 (Length: 417)

Name: NF14210_high_11
Description: NF14210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14210_high_11
NF14210_high_11
[»] chr2 (9 HSPs)
chr2 (164-391)||(2360325-2360552)
chr2 (38-130)||(2360586-2360678)
chr2 (273-322)||(36114581-36114630)
chr2 (273-329)||(11513861-11513917)
chr2 (275-321)||(14220880-14220926)
chr2 (273-327)||(43199377-43199431)
chr2 (211-259)||(39659643-39659689)
chr2 (281-329)||(1625871-1625919)
chr2 (212-259)||(41407191-41407236)
[»] chr5 (6 HSPs)
chr5 (211-259)||(19460511-19460557)
chr5 (271-331)||(10272480-10272540)
chr5 (274-329)||(6587158-6587213)
chr5 (273-328)||(9202800-9202855)
chr5 (272-329)||(12425533-12425590)
chr5 (273-309)||(12595811-12595847)
[»] chr7 (6 HSPs)
chr7 (273-329)||(1417227-1417283)
chr7 (273-307)||(30180014-30180048)
chr7 (273-329)||(9527141-9527197)
chr7 (212-259)||(21568763-21568808)
chr7 (273-329)||(39967883-39967939)
chr7 (273-329)||(48470007-48470063)
[»] chr6 (8 HSPs)
chr6 (273-329)||(9093607-9093663)
chr6 (273-327)||(2112164-2112217)
chr6 (276-329)||(415270-415323)
chr6 (273-326)||(28621164-28621217)
chr6 (273-329)||(2735032-2735088)
chr6 (273-329)||(4248921-4248977)
chr6 (273-329)||(8147665-8147721)
chr6 (273-309)||(24836270-24836306)
[»] chr3 (11 HSPs)
chr3 (273-329)||(37788823-37788879)
chr3 (273-330)||(10101526-10101583)
chr3 (273-330)||(10212451-10212508)
chr3 (273-331)||(10357396-10357454)
chr3 (275-329)||(14145877-14145931)
chr3 (280-329)||(21367637-21367686)
chr3 (211-259)||(31365407-31365453)
chr3 (273-309)||(15304418-15304454)
chr3 (273-329)||(30956677-30956733)
chr3 (273-329)||(30972489-30972545)
chr3 (273-329)||(36783385-36783441)
[»] chr1 (9 HSPs)
chr1 (273-329)||(49888730-49888786)
chr1 (273-329)||(28467358-28467414)
chr1 (273-328)||(36070213-36070268)
chr1 (273-307)||(38160076-38160110)
chr1 (280-329)||(17269220-17269269)
chr1 (273-329)||(5592736-5592792)
chr1 (271-327)||(7218127-7218183)
chr1 (270-306)||(8081847-8081883)
chr1 (273-329)||(27738231-27738287)
[»] chr4 (6 HSPs)
chr4 (273-328)||(25885822-25885877)
chr4 (273-327)||(3155566-3155620)
chr4 (277-327)||(6927546-6927596)
chr4 (211-259)||(30377817-30377863)
chr4 (273-329)||(17884031-17884087)
chr4 (273-329)||(52746891-52746947)
[»] scaffold0024 (2 HSPs)
scaffold0024 (236-307)||(21351-21426)
scaffold0024 (275-327)||(27541-27593)
[»] chr8 (6 HSPs)
chr8 (275-329)||(2595048-2595102)
chr8 (279-329)||(7514547-7514597)
chr8 (211-259)||(14956430-14956476)
chr8 (273-329)||(34770855-34770911)
chr8 (208-259)||(37353373-37353422)
chr8 (273-329)||(41336696-41336752)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 164 - 391
Target Start/End: Complemental strand, 2360552 - 2360325
Alignment:
Q  164 ttttagatcaaccattaagaccctttttagataaacaactaaatttgatttgcagcttatagcacacaaatgcttatcatgataagcacttatgtaaaca 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2360552 ttttagatcaaccattaagaccctttttagataaacaactaaatttgatttgcagcttatagcacacaaatgcttatcatgataagcacttatgtaaata 2360453  T
Q  264 tattttcataaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagccaacttcataagttcgctcaaataatatcaaaat 363  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2360452 tattttcataaaagataaaataaagttcaattgttttcgcataaacaacaagttgttttcataagccaacttcataagttcgctcaaataatatcaaaat 2360353  T
Q  364 ttaaaagtgcttatgctagtagaaaagt 391  Q
    | ||| ||||||||||||||||||||||    
T  2360352 tcaaaggtgcttatgctagtagaaaagt 2360325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 2360678 - 2360586
Alignment:
Q  38 gacttagagtcatataaattcagcaacttttttcttttagaagccctaacaaccattattgaactacacagatcaccccttcaaatcctgggc 130  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2360678 gacttagagtcatataaattcagcaacttttttcttttagaagacctaacaaccattattgaactacaaagatcaccccttcaaatcctgggc 2360586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 36114630 - 36114581
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgtttt 322  Q
    |||||||||||||||||| ||||||||| |||||| ||| ||||||||||    
T  36114630 aaaagataaaataaagttaaattgtttttgtataagcaataagttgtttt 36114581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 11513861 - 11513917
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||  |||||||||| ||||| | | |||||||||||||||||    
T  11513861 aaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataagc 11513917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 14220926 - 14220880
Alignment:
Q  275 aagataaaataaagttcaattgttttcgtataaacaacaagttgttt 321  Q
    |||||||||||||||| || |||||| |||||||||| |||||||||    
T  14220926 aagataaaataaagttaaactgttttggtataaacaataagttgttt 14220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 43199377 - 43199431
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 327  Q
    |||||||||||||||||| |||| | ||||||||| | | |||||||||||||||    
T  43199377 aaaagataaaataaagttaaattatcttcgtataagctataagttgttttcataa 43199431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 39659689 - 39659643
Alignment:
Q  211 atttgcagcttatagcacacaaatgcttatcatgataagcacttatgta 259  Q
    |||||||||||| ||||||  ||||||||||||||||||| ||||||||    
T  39659689 atttgcagcttagagcaca--aatgcttatcatgataagcgcttatgta 39659643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 1625871 - 1625919
Alignment:
Q  281 aaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||| ||||||||||||||||   | |||||||||||||||||    
T  1625871 aaataaagttaaattgttttcgtataagttataagttgttttcataagc 1625919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 41407191 - 41407236
Alignment:
Q  212 tttgcagcttatagcacacaaatgcttatcatgataagcacttatgta 259  Q
    ||||||||||||||||||  |  |||||||||||||||||||||||||    
T  41407191 tttgcagcttatagcaca--agcgcttatcatgataagcacttatgta 41407236  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 19460557 - 19460511
Alignment:
Q  211 atttgcagcttatagcacacaaatgcttatcatgataagcacttatgta 259  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  19460557 atttgcagcttatagcaca--aatgcttatcatgataagcacttatgta 19460511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 10272540 - 10272480
Alignment:
Q  271 ataaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagcca 331  Q
    |||||||||||||| ||||  |||||||||||||||| | | |||||||||||||||||||    
T  10272540 ataaaagataaaattaagtcaaattgttttcgtataagctataagttgttttcataagcca 10272480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 6587213 - 6587158
Alignment:
Q  274 aaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||| ||||||| ||||||||||||||||||| | | |||||||||||||||||    
T  6587213 aaagattaaataaacttcaattgttttcgtataagctataagttgttttcataagc 6587158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 9202855 - 9202800
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataag 328  Q
    |||||||||||||||||| |||||||||| ||||| ||| ||| ||||||||||||    
T  9202855 aaaagataaaataaagttaaattgttttcatataagcaataagctgttttcataag 9202800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 12425533 - 12425590
Alignment:
Q  272 taaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    ||||||||||||||||||| |||||||||||||||| | | ||| |||||||| ||||    
T  12425533 taaaagataaaataaagttaaattgttttcgtataagctataagctgttttcacaagc 12425590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 12595847 - 12595811
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaac 309  Q
    |||||||||||||||||| |||||||||| |||||||    
T  12595847 aaaagataaaataaagttaaattgttttcatataaac 12595811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 1417227 - 1417283
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||  |||||||||| ||||| ||| |||||||||||||||||    
T  1417227 aaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataagc 1417283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 30180014 - 30180048
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataa 307  Q
    |||||||||||||||||| ||||||||||||||||    
T  30180014 aaaagataaaataaagttaaattgttttcgtataa 30180048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 9527197 - 9527141
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||| ||||||||  || ||||||| ||||||| | |||||||||||||||||    
T  9527197 aaaagatataataaagtcaaactgttttcatataaactataagttgttttcataagc 9527141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 21568808 - 21568763
Alignment:
Q  212 tttgcagcttatagcacacaaatgcttatcatgataagcacttatgta 259  Q
    |||||||||||||||| |  | ||||||||||||||||||||||||||    
T  21568808 tttgcagcttatagcata--agtgcttatcatgataagcacttatgta 21568763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 39967883 - 39967939
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    ||||||||||||||| || |||||||||||||  | | | |||||||||||||||||    
T  39967883 aaaagataaaataaacttaaattgttttcgtactagctataagttgttttcataagc 39967939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 48470007 - 48470063
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||| ||||| ||||||||| ||||| |  | |||||||||||||||||    
T  48470007 aaaagataaaattaagttaaattgtttttgtatataatataagttgttttcataagc 48470063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 9093663 - 9093607
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||| |||||||||||||||| | | ||| |||||||||||||    
T  9093663 aaaagataaaataaagttaaattgttttcgtataagctataagctgttttcataagc 9093607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 2112164 - 2112217
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 327  Q
    |||||||||||||||||| ||||| |||| ||||||| | |||||||||||||||    
T  2112164 aaaagataaaataaagttaaattg-tttcatataaactataagttgttttcataa 2112217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 415270 - 415323
Alignment:
Q  276 agataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||| |||||| |||||||||||||||| | | |||||||||| ||||||    
T  415270 agataaaacaaagttaaattgttttcgtataagctataagttgtttttataagc 415323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 28621217 - 28621164
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcata 326  Q
    |||||||||||||||||| ||||||||| |||||| | ||||| ||||| ||||    
T  28621217 aaaagataaaataaagttaaattgtttttgtataagctacaagatgtttacata 28621164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 2735032 - 2735088
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||| |||| |||| |||||| | | ||| |||||||||||||    
T  2735032 aaaagataaaataaagttaaattatttttgtataatctataagctgttttcataagc 2735088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 4248921 - 4248977
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||  ||||| ||| |||||||||| ||| ||||||| |||||    
T  4248921 aaaagataaaataaagtcaaattgattttgtataaacaataaggtgttttcctaagc 4248977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 8147665 - 8147721
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||| ||||||||| |||||  | | ||| |||||||||||||    
T  8147665 aaaagataaaataaagttgaattgtttttgtatattctaaaagatgttttcataagc 8147721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 24836306 - 24836270
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaac 309  Q
    |||||||||||||||||  ||||||||||||||||||    
T  24836306 aaaagataaaataaagtcaaattgttttcgtataaac 24836270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 37788823 - 37788879
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    ||||||||||||||||| ||||| ||||||||||| | | |||||||||||||||||    
T  37788823 aaaagataaaataaagtccaattattttcgtataatctataagttgttttcataagc 37788879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 10101583 - 10101526
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagcc 330  Q
    |||||||||||||||||| |||||||||| |||||   | ||||||||||||||||||    
T  10101583 aaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataagcc 10101526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 10212508 - 10212451
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagcc 330  Q
    |||||||||||||||||| |||||||||| |||||   | ||||||||||||||||||    
T  10212508 aaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataagcc 10212451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 10357396 - 10357454
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagcca 331  Q
    |||||||||||||| ||| |||| ||||| |||||   |||||||||||||||||||||    
T  10357396 aaaagataaaataatgttaaatttttttcatataagatacaagttgttttcataagcca 10357454  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 14145877 - 14145931
Alignment:
Q  275 aagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||| |||||||||||||||  | | ||||| |||||||||||    
T  14145877 aagataaaataaagttaaattgttttcgtatatgctataagttattttcataagc 14145931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 21367637 - 21367686
Alignment:
Q  280 aaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    ||||||||||| ||||||||||||||||   | |||||||||||||||||    
T  21367637 aaaataaagttaaattgttttcgtataatgtataagttgttttcataagc 21367686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 31365453 - 31365407
Alignment:
Q  211 atttgcagcttatagcacacaaatgcttatcatgataagcacttatgta 259  Q
    |||||||||||||||||||  | || |||||||||||||||||||||||    
T  31365453 atttgcagcttatagcaca--agtgattatcatgataagcacttatgta 31365407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 15304454 - 15304418
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaac 309  Q
    |||||||||||||||||| |||||||||| |||||||    
T  15304454 aaaagataaaataaagttaaattgttttcatataaac 15304418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 30956733 - 30956677
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||| ||||||||| |||||  | | |||||||||||| ||||    
T  30956733 aaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagc 30956677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 30972545 - 30972489
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||| ||||||||| |||||  | | |||||||||||| ||||    
T  30972545 aaaagataaaataaagttaaattgtttttgtataggctataagttgttttcaaaagc 30972489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 36783441 - 36783385
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||  |||||||||| ||||||| |  || |||||||||||||    
T  36783441 aaaagataaaataaagtaaaattgttttcatataaactattagctgttttcataagc 36783385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 49888730 - 49888786
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||| |||||||||||||||| | |  ||||||||||||||||    
T  49888730 aaaagataaaataaagtttaattgttttcgtataagctattagttgttttcataagc 49888786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 28467414 - 28467358
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||  |||| ||||| ||||| | |||||||||||||||||||    
T  28467414 aaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataagc 28467358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 36070213 - 36070268
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataag 328  Q
    |||||||||||||||||| |||||| |||| |||| | | ||||||||||||||||    
T  36070213 aaaagataaaataaagttaaattgtcttcggataagctataagttgttttcataag 36070268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 38160110 - 38160076
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataa 307  Q
    |||||||||| ||||||||||||||||||||||||    
T  38160110 aaaagataaactaaagttcaattgttttcgtataa 38160076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 17269220 - 17269269
Alignment:
Q  280 aaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    ||||||||||  |||||||||| ||||| ||| |||||||||||||||||    
T  17269220 aaaataaagtcaaattgttttcatataagcaataagttgttttcataagc 17269269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 5592792 - 5592736
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||  ||||||| || ||||| | | |||||||||||||||||    
T  5592792 aaaagataaaataaagtcgaattgttgtcatataagctataagttgttttcataagc 5592736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 7218183 - 7218127
Alignment:
Q  271 ataaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 327  Q
    ||||||| |||||||||||  |||||||||| ||||| | | |||||||||||||||    
T  7218183 ataaaaggtaaaataaagtcaaattgttttcatataagctataagttgttttcataa 7218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 8081847 - 8081883
Alignment:
Q  270 cataaaagataaaataaagttcaattgttttcgtata 306  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  8081847 cataaaagataaaataaagttaaattgtttttgtata 8081883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 27738287 - 27738231
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||  |||||||||| ||||| | | || ||||||||||||||    
T  27738287 aaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataagc 27738231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 25885822 - 25885877
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataag 328  Q
    |||||||||||||||||| |||||||||||| ||| | | ||||||||||||||||    
T  25885822 aaaagataaaataaagttaaattgttttcgtgtaagctataagttgttttcataag 25885877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 3155566 - 3155620
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 327  Q
    |||||||||||||||||| ||||||||| ||| || | ||||| |||||||||||    
T  3155566 aaaagataaaataaagttaaattgtttttgtacaagctacaagctgttttcataa 3155620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 6927596 - 6927546
Alignment:
Q  277 gataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 327  Q
    |||||||||||||| |||||||||| | ||||| | |||||||||||||||    
T  6927596 gataaaataaagttaaattgttttcatgtaaactataagttgttttcataa 6927546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 30377863 - 30377817
Alignment:
Q  211 atttgcagcttatagcacacaaatgcttatcatgataagcacttatgta 259  Q
    |||||||||||||||||||  |||| |||||||||||||||||| ||||    
T  30377863 atttgcagcttatagcaca--aatgtttatcatgataagcacttgtgta 30377817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 17884031 - 17884087
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||| ||||||||| ||||||   |  ||||||||||||||||    
T  17884031 aaaagataaaataaagttaaattgtttttgtataagttatcagttgttttcataagc 17884087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 52746947 - 52746891
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||| ||||||||| || ||| | | ||| |||||||||||||    
T  52746947 aaaagataaaataaagttaaattgtttttgtgtaagccataagctgttttcataagc 52746891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 21426 - 21351
Alignment:
Q  236 cttatcatgataagcacttatgta-aacatattttcata---aaagataaaataaagttcaattgttttcgtataa 307  Q
    |||| ||||||||||||||||||| ||  |||||| |||   ||||||||||||||||| ||||||||||||||||    
T  21426 cttaccatgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataa 21351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 27541 - 27593
Alignment:
Q  275 aagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataa 327  Q
    |||||||||||||||  |||||||||| ||||||| | |||||||||||||||    
T  27541 aagataaaataaagtcaaattgttttcatataaactataagttgttttcataa 27593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 2595102 - 2595048
Alignment:
Q  275 aagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||| |||||||||||||  | | | |||||||||||||||||    
T  2595102 aagataaaataaagttaaattgttttcgtactagccataagttgttttcataagc 2595048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 7514547 - 7514597
Alignment:
Q  279 taaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||| |||||||||||||| ||||| | ||||| |||||||||||||    
T  7514547 taaaataatgttcaattgttttcatataagctacaagctgttttcataagc 7514597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 14956476 - 14956430
Alignment:
Q  211 atttgcagcttatagcacacaaatgcttatcatgataagcacttatgta 259  Q
    |||||||||||||||||||  |  |||||||||||||||||||||||||    
T  14956476 atttgcagcttatagcaca--atcgcttatcatgataagcacttatgta 14956430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 34770855 - 34770911
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    |||||||||||||||||  |||||||||| | ||| | | |||||||||||||||||    
T  34770855 aaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataagc 34770911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 37353422 - 37353373
Alignment:
Q  208 ttgatttgcagcttatagcacacaaatgcttatcatgataagcacttatgta 259  Q
    ||||||||||||||||||  || |||||||||| ||||||||| ||||||||    
T  37353422 ttgatttgcagcttatag--cataaatgcttatgatgataagcgcttatgta 37353373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 41336752 - 41336696
Alignment:
Q  273 aaaagataaaataaagttcaattgttttcgtataaacaacaagttgttttcataagc 329  Q
    ||||||||||||| |||  |||||||||| ||||||| | || ||||||||||||||    
T  41336752 aaaagataaaatatagtcaaattgttttcatataaactagaacttgttttcataagc 41336696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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