View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14210_high_12 (Length: 407)
Name: NF14210_high_12
Description: NF14210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14210_high_12 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 18144304 - 18143965
Alignment:
| Q |
1 |
ctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacctcttgggttgtaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144304 |
ctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacctcttgggttgtaatt |
18144205 |
T |
|
| Q |
101 |
gctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144204 |
gctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgag |
18144105 |
T |
|
| Q |
201 |
acgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18144104 |
acgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctct |
18144005 |
T |
|
| Q |
301 |
tttgccttggaaaattataaagttacctcatggagaatta |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144004 |
tttgccttggaaaattataaagttacctcatggagaatta |
18143965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 48185620 - 48185281
Alignment:
| Q |
1 |
ctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacctcttgggttgtaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
48185620 |
ctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacgtcttgggttgtaatt |
48185521 |
T |
|
| Q |
101 |
gctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
48185520 |
gctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtctggttagaatttctttgaatatgtccttgaattcatccgag |
48185421 |
T |
|
| Q |
201 |
acgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
48185420 |
acgtgagcaaaactcagattggagaagaatatggtctgcgggttccgtttattggaactttgtttctatttatttttgtttcgaattggtcaggggctct |
48185321 |
T |
|
| Q |
301 |
tttgccttggaaaattataaagttacctcatggagaatta |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48185320 |
tttgccttggaaaattataaagttacctcatggagaatta |
48185281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 26842781 - 26842690
Alignment:
| Q |
93 |
ttgtaattgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtc |
184 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
26842781 |
ttgttattgctatcttattaatttcaatcattctaattgttagaaatccacaaactattccaataattggtcagaatttctttgaatatgtc |
26842690 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 102 - 340
Target Start/End: Complemental strand, 9294013 - 9293775
Alignment:
| Q |
102 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgaga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9294013 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgaga |
9293914 |
T |
|
| Q |
202 |
cgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctctt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9293913 |
cgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctctt |
9293814 |
T |
|
| Q |
302 |
ttgccttggaaaattataaagttacctcatggagaatta |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293813 |
ttgccttggaaaattataaagttacctcatggagaatta |
9293775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9292378 - 9292295
Alignment:
| Q |
1 |
ctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattac |
84 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9292378 |
ctatgatatatctgttgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattac |
9292295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 102 - 339
Target Start/End: Complemental strand, 24489470 - 24489233
Alignment:
| Q |
102 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgaga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489470 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgaga |
24489371 |
T |
|
| Q |
202 |
cgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctctt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489370 |
cgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctctt |
24489271 |
T |
|
| Q |
302 |
ttgccttggaaaattataaagttacctcatggagaatt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489270 |
ttgccttggaaaattataaagttacctcatggagaatt |
24489233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 5 - 340
Target Start/End: Original strand, 231087 - 231422
Alignment:
| Q |
5 |
gatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacctcttgggttgtaattgcta |
104 |
Q |
| |
|
|||||||| | ||| |||||||| ||||| ||||||||||||||||| | ||||||| | ||||| || ||||| || || |||||||| |||||| ||| |
|
|
| T |
231087 |
gatatatcgggtgtagaagtaggccaacacttctattggcaaataggaggttttcaaattcatgcccaggtactcatcacttcttgggtcgtaattacta |
231186 |
T |
|
| Q |
105 |
tcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgagacgt |
204 |
Q |
| |
|
|||| || |||| | ||| |||| | ||||| ||||| || || || ||| |||||||| ||||||||||||||||| || || |||||| | |
|
|
| T |
231187 |
tcttgctaggttcagttgtcatagctgttcggaatccacaaaccatcccgaccgacgggcagaatttttttgaatatgtccttgagtttattcgagactt |
231286 |
T |
|
| Q |
205 |
gagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctcttttg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||||||||| |||||||| || |||||||| |
|
|
| T |
231287 |
gagcaaaactcagattggagaagaatatggtccctgggttccctttattggaactatgttcctttttatttttgtttcaaattggtcgggtgctctttta |
231386 |
T |
|
| Q |
305 |
ccttggaaaattataaagttacctcatggagaatta |
340 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
231387 |
ccttggaaaattatagagttaccccatggggaatta |
231422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 34676651 - 34676485
Alignment:
| Q |
1 |
ctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacctcttgggttgtaatt |
100 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||||| ||||||||||||| || ||| |||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
34676651 |
ctatgatatatctgttgtggaagtagggaaacattttcattggcaaataggtgagttttaagtgcatactcaagtgcttattacctcttgggttgtaatt |
34676552 |
T |
|
| Q |
101 |
gctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaa |
168 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
34676551 |
gctatcttattaatttcaaccattctaattgttagaaatccgcaaactattcc-atgtccggtcagaa |
34676485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 174 - 340
Target Start/End: Original strand, 22965856 - 22966021
Alignment:
| Q |
174 |
ttgaatatgtccttgaattcatccgagacgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttat |
273 |
Q |
| |
|
|||||||||||||||||||||| ||| | || || |||||||| ||| |||||||||||||| |||| || | |||||||| ||||||| ||||||| |
|
|
| T |
22965856 |
ttgaatatgtccttgaattcattcgataagtaagaaaaactcaaattagagaagaatatggtatgtggatttcaattattggagctttgtttttatttat |
22965955 |
T |
|
| Q |
274 |
ttttgtttcgaattggtcaggggctcttttgccttggaaaattataaagttacctcatggagaatta |
340 |
Q |
| |
|
||||||||||||||||||| | | ||||||||| |||||||||||||||| | || |||||||| |
|
|
| T |
22965956 |
ttttgtttcgaattggtcaaagattattttgcctt-aaaaattataaagttacgttattgagaatta |
22966021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 218 - 340
Target Start/End: Complemental strand, 25503 - 25370
Alignment:
| Q |
218 |
attggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcg-----------aattggtcaggggctcttttgcc |
306 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
25503 |
attggagaagaatatggtccttgggttccgtttattggaactttgttcctatttatttttgtttcgaatttgtttcgaattggtcaggggttcttttgcc |
25404 |
T |
|
| Q |
307 |
ttggaaaattataaagttacctcatggagaatta |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
25403 |
ttggaaaattataaagttacctcatggagaatta |
25370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 343
Target Start/End: Complemental strand, 8868319 - 8868187
Alignment:
| Q |
209 |
aaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctcttttgcctt |
308 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| | || | ||| ||||| ||| ||||| |||||||||||||||| ||| |
|
|
| T |
8868319 |
aaaaatcagattggagaagaatatggtcagtgggttccatttattggaaccctttt--tttttttttttttttggaatttgtcaggggctcttttgtctt |
8868222 |
T |
|
| Q |
309 |
ggaaaattataaagttacctcatggagaattatct |
343 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8868221 |
ggaaaattataaagttatctcatggagaattatct |
8868187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 25719975 - 25719928
Alignment:
| Q |
202 |
cgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtt |
249 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
25719975 |
cgtgagcaaaactcagattggggaagaatattgtccttgggttccgtt |
25719928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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