View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14210_high_15 (Length: 352)
Name: NF14210_high_15
Description: NF14210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14210_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 3 - 339
Target Start/End: Complemental strand, 33056690 - 33056354
Alignment:
| Q |
3 |
atatcatctccaaggagaatatttgaaggtttcaagtctctgtgtatgaagctttgatgagccaagctatgtaggtactcaacaccccttgcaacatcta |
102 |
Q |
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| T |
33056690 |
atatcatctccaaggagaatatttgaaggtttcaagtctctgtgtatgaagctttgatgagccaagctatgtaggtactcaacaccccttgcaacatcta |
33056591 |
T |
|
| Q |
103 |
aggcgatgaccaatctcttattccacccgagtggttcgagtccttcctctggccaattaaaaatatacctacttagggtcccctgaggcatgtactcata |
202 |
Q |
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| T |
33056590 |
aggcgatgaccaatctcttattccacccgagtggttcgagtccttcctctggccaattaaaaatatacctacttagggtcccctgaggcatgtactcata |
33056491 |
T |
|
| Q |
203 |
aacaagaagcttttcattcccatccaagcagtaaccaagaagagcaacaagatggcggtgacgaacctttgtcaaaacagcaatttcagactgaaattct |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33056490 |
aacaagaagcttttcattcccatccaagcagtaaccaagaagagcaacaagatgccggtgacgaacctttgtcaaaacagcaatttcagactgaaattct |
33056391 |
T |
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| Q |
303 |
gctgcacccttcccaactattgctccacacatcattc |
339 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
33056390 |
gctgcacccttcccaactattgccccacacatcattc |
33056354 |
T |
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