View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14210_high_17 (Length: 342)
Name: NF14210_high_17
Description: NF14210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14210_high_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 342
Target Start/End: Complemental strand, 5310839 - 5310509
Alignment:
| Q |
11 |
ataatacttacttggtttagaaatacaannnnnnnnnnnaaccaatgggggttgagctgaaggagcaatcttccacgtgatataccatattctcttagtg |
110 |
Q |
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| T |
5310839 |
ataatacttacttggtttagaaatacaatttttttttttaaccaatgggggttgagctgaaggagcaatcttccacgtgacataccaaattctcttagtg |
5310740 |
T |
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| Q |
111 |
agctatatatagtagagtacttagctatacaaagctagttgttgagaattaactcatcaggannnnnnncaaatattgaaaaaataacatacaaagaagg |
210 |
Q |
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| T |
5310739 |
agctatatatagtagagtacttagctatacaaagctagttgttgagaattaactcatcaggatttttt-caaatattgaaaaaataacatacaaagaagg |
5310641 |
T |
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| Q |
211 |
tccttgaagttaaggacaaaaacttctacatttaaatttttaaaaataagttgaaatactttctcatgattatcatgatcaatttttcaacctttcagat |
310 |
Q |
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| T |
5310640 |
tccttgaagttaaggacaaaaacttctacatttaaatttttaaaaataagttgaaatactttctcatgattatcatgatcaatttttcaacctttcagat |
5310541 |
T |
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| Q |
311 |
tgtatgtaaaaagttgattttatcatgagatg |
342 |
Q |
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| T |
5310540 |
tgtatgtaaaaagttgattttatcatgagatg |
5310509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 189 - 322
Target Start/End: Original strand, 8152191 - 8152324
Alignment:
| Q |
189 |
aaaaaataacatacaaagaaggtccttgaagttaaggacaaaaacttctacatttaaatttttaaaaataagttgaaatactttctcatgattatcatga |
288 |
Q |
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| T |
8152191 |
aaaaaattacacacaaagaaggtcaatgaagtttaggacaaaaatttctaccttttcatttttgaaaataagttgaaatactttctaatgattcccatga |
8152290 |
T |
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| Q |
289 |
tcaatttttcaacctttcagattgtatgtaaaaa |
322 |
Q |
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| T |
8152291 |
tcaatatttcaacctttttgattgtatgtcaaaa |
8152324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 34546501 - 34546559
Alignment:
| Q |
248 |
ttttaaaaataagttgaaatactttctcatgattatcatgatcaatttttcaacctttc |
306 |
Q |
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| T |
34546501 |
ttttgaaaataacctgaaataatttctcatgattaccatgatcaatctttcaacatttc |
34546559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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